RNA id: TCONS_00001469


Basic Information

Item Value
RNA id TCONS_00001469
length 1110
RNA type mRNA
GC content 0.52
exon number 2
gene id XLOC_000921
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 552275 ~ 558260 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCAAGAGGACACAAGCCTCGCAAGAAGAGTATCAATGTCTACGGAAGCGCTGCTAACGGTTATGTCCAACATCACCAACACCACCGGCCCCCAGATGCCCGGTGAGGGGATCCGTATCCTGCAGATGATCCTGACCGTGCTCATCTTCACCGTGGGCATCTCTCTGAACGCTCTGGTGGTGTGGGCGCTGGGCGTCCGCGTTTGGTGCCGCCGCAGAAGCTCAATGGGTGAGACTCAGAGCGCAGACAGCTTCAGGATCTACGTGGTCAACCTTGCGCTTGCAGACTTGGTGCTACTACTGCGTACGCCGCTAATGCTTGCGTACTTGGCAAACAACTTCTCGTGGACCCTCGGGGAAGCCGTGTGCAGGCTGATTATTTATTTACGTTGTCTGGGATTGTACGCAAGCGCTTTTCTACTGTGTGCGGTAGCAGTGGAGAGATGTTTGTGTCTACTTAGACCTGTTTGGGCACGATTGAAGCGCCCTCGTTGGGTTGTACCGCTCGCTTGTGTTGCAATCTGGGTGCTAGCTGCAGCATTCGCATCTCCATATATCAAGTCGGCTATTATCGTTGACCTGAACAACCATAAAGCATGTATTGAATACAATAAGGAGGCAGGACAGGCTTTGATAGTGGTGGAAACGGTGTTCGGTTTCCTGCTGCCGCTGGTGATCTTTATGTCCTGTAATATTGCTGTGATCTTCTGCGCAAAAAAGGCTGAAAGTTCAATGTCGTCACCGACGTCTTCATCCGCATCGGCGTACACATCGCAGAGATTGACCCGACTTTACAGAGTTTTGTTTCTCACCATGCTGCTGTTTTTGACCTGCTGGGTGCCGTATTTTGTGTGCCGCTTTTTAAGGGCTCTTGCGCAAGAACGCGGATGGACGACGCTCAAAGAACAAGCCATAGGCGGCGCTTACGTGTCGCTGTTCCTGGTCTACTTTAAAAGCGCAGTCAATCCCATCCTCTACGTGTTTGCAGCTCGCGGACTCGGACGTACAGTCCGGGCGTCACTTCTATCAACCATCGAGAGAGTCTTCAACGAGGAGTTATCAGAGTCTTTACGAAGAAAATCCCTACGAAGGAGAGACTCTCAGTTTTAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000184316

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001467 lncRNA downstream 38558 511771 ~ 513717 (-) True XLOC_000919
TCONS_00001463 lncRNA downstream 67687 479807 ~ 484588 (-) False XLOC_000918
TCONS_00001454 lncRNA downstream 206380 343617 ~ 345895 (-) False XLOC_000914
TCONS_00002896 lncRNA downstream 341462 209129 ~ 210813 (-) True XLOC_000912
TCONS_00002895 lncRNA downstream 351081 199526 ~ 201194 (-) False XLOC_000910
TCONS_00001475 lncRNA upstream 62730 620990 ~ 622179 (-) False XLOC_000923
TCONS_00003289 lncRNA upstream 220315 778575 ~ 779614 (-) True XLOC_000927
TCONS_00003290 lncRNA upstream 447677 1005937 ~ 1014866 (-) True XLOC_000929
TCONS_00002897 lncRNA upstream 585702 1143962 ~ 1253194 (-) True XLOC_000931
TCONS_00003292 lncRNA upstream 732915 1291175 ~ 1314969 (-) False XLOC_000932
TCONS_00001468 mRNA downstream 27842 518853 ~ 524433 (-) True XLOC_000920
TCONS_00001465 mRNA downstream 38489 508885 ~ 513786 (-) False XLOC_000919
TCONS_00001466 mRNA downstream 38513 509072 ~ 513762 (-) False XLOC_000919
TCONS_00001461 mRNA downstream 57995 474085 ~ 494280 (-) False XLOC_000918
TCONS_00001464 mRNA downstream 59057 487189 ~ 493218 (-) True XLOC_000918
TCONS_00001470 mRNA upstream 51822 610082 ~ 614638 (-) False XLOC_000922
TCONS_00001471 mRNA upstream 52067 610327 ~ 614583 (-) False XLOC_000922
TCONS_00001472 mRNA upstream 52429 610689 ~ 614592 (-) False XLOC_000922
TCONS_00001473 mRNA upstream 52433 610693 ~ 614592 (-) True XLOC_000922
TCONS_00001474 mRNA upstream 59360 617620 ~ 625875 (-) False XLOC_000923
TCONS_00001460 other downstream 80350 467743 ~ 471925 (-) True XLOC_000917
TCONS_00001442 other downstream 398429 153238 ~ 153846 (-) False XLOC_000909
TCONS_00001429 other downstream 502440 47954 ~ 49835 (-) False XLOC_000904
TCONS_00001421 other downstream 507729 42204 ~ 44546 (-) False XLOC_000903
TCONS_00001476 other upstream 62765 621025 ~ 625080 (-) False XLOC_000923
TCONS_00001485 other upstream 492681 1050941 ~ 1051057 (-) True XLOC_000930
TCONS_00001486 other upstream 755345 1313605 ~ 1315753 (-) True XLOC_000932
TCONS_00001492 other upstream 1312601 1870861 ~ 1875118 (-) False XLOC_000939
TCONS_00001493 other upstream 1315748 1874008 ~ 1885600 (-) False XLOC_000939

Expression Profile

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