RNA id: CI01000140_01688652_01717386.mRNA



Basic Information


Item Value
RNA id CI01000140_01688652_01717386.mRNA
length 3699
RNA type mRNA
GC content 0.43
exon number 5
gene id CI01000140_01688652_01717386
representative True

Chromosome Information


Item Value
chromosome id CI01000140
NCBI id null
chromosome length 2494207
location 1686946 ~ 1718419 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATTTAAAGGGCACACGTGCTGAATCAGCGCATTTTTAATTTTGCCCCAAAATCAATGGGGTATTTTGAGCTGAAACTTCACAGACACATTCAGGGGACACCTTAGACTTATATTACATCTTGTAAAAAAGGGTTCTAGGGCACCTTTAAGATTTTATACAAGATACAAGATTTTAATAATGTATTAGTAAATGTTGAAAGTAACATTAAAAAAGATTAATAAATGCAGTAGAAGTGCAGTTCATTATTAGTTCATGTTAACTAATGAACCTTGTTGTAAAGTGTTACCACAAAAACCAACAAAAACCACCCCATGGGGGGAAACAAGACCAACAACTGGACAAGCCATGACCTGGCTAAGCAAACAGGATCTGGCAGGGCAGGACACAAGGGGAACATTCGACAACGATCTGGTACAGGACTGCAAATACAAGGAGAATAAATACAGAGCAAACAAGGCAGGTTATGAGAGAAAACAGGTGGGGCTAATGAACCAATAAACAGGTAACAAATAGGCGGGTTGAGACAATAGACAGGATAGCATGTGGCACAAGGAAACAAATATGACAAGCCATGTGCTCACACCGAACATGACAAAAACAAGAACTCATAGCCAATAAACACAATCACAAGCCATGCGCTCAAATACAACACGAATACGCACCTAATGAGAACATGAATAAGCCACAGAATAACCACAGAACCGAAATCAAACTAGACATGAGTGCGGGAATCCGAACACCACGCTTTGAACATGAAAAAAGGCACACAGACAAGAGATTGCACGCTCACACAAAGACAAGATAATACAGAAGCATCAGGGCTCTGTCACAAAACCAAGAATAAGCTCAAAGTGACAGAACCCTGACAGATATAGTGACAGTAGTATAATGTGACATCTCTGTTATTGGTTTGTGCTCCAGAACCAGCTGAAGGAGACGCAGAGGTCGTTCCAGCAGAGGATCCAGCAGAGAGAGAAAGATCTTCAGCAGCTGAGAGAGGCTGTGGAGTCTCATAAGGTGAGTCTGGAGAAGAAGAGAAGTTTGAGAAGTCTCAGTCAGGACTCACTGGAGCCACTGTGTGATTGTGATGTGTGTCCTAACAGAGCTCTGCACAGACAGCAGTGGAGGACAGTGAGAGGATCTTCACTGAGCTCATCCGCTCCATTGAGAGAAGCCGCTCTGAGGTCACACAGCGGATCAGAGATCAGGAAAAGACTGCAGTGAGTCGAGCTAAAGGACGACTGGAGCAACTGGAGCAGGAGATCAATGATATGAGGAGGAGAGACGCTGAGCTGGAGCAGCTTTCACACACACAGGATCACATCCATTTCTTGCAGGTAACAGAGATCCAGAAGAACAGGATCAAAGTGAACTTGAACAAGAGACTCACAGAGAAATTTCTCACAGAGATCTCACAGAGATTTCATGAGAGCTGATCGAGCCTTTGACTGAAGTGTTGTTTTATATATATATATATATATAATGCATTTCAGCTCTGGAAATCTCTTAGAAAAATATTCTTTCTGGGACATATATTTTTAGCTGCCAAACTCCACTAATGCAACAAAAAGTTAAAAACTACCAGAACATTTAAACTTTTTTATCCAAATTTTCCCTTTTGGTTTACATCATGGTCAAATCTTGATGGTACCAGTTTTGAGTAATTTCACCAAATTTACTTCAAGTGATCTTCAAATCTGATCAAATGGATTTGCATTTTCATAATTGTTTGCATGAGGATCACACCCATGAGTATCTCCATCTGGATCGCATGGTGCTCTACCCAGATGACTCCATGTGCACCCTATATCACGCTGGCCTCAAAGAGCAGACAGAGTGGGTGAAGAAGAGAAGGATCCCAAATATGTTGGTCCTAGAGCTGCCTATTCTCCCAACCTTGAGATCTCACCTTCTCCACCGCCTCCTGGCCCTCCTTCCTCTGCTGGTCCTGCCCAGCCTCCTGGCTCCTTTGTCTCCGCTGGTCCCATCCATCCTCCAAGCTCCAGCATTCCAACCATGGAGGTCATCCAAAGCCCCGTCGTCCTCGCAAGTTTTATCAAGAAATTGTGGTAGCTATGACTTGAAAAACTCCACCGGCTGCTGGTCAACTCCTCAGGATCACACCCATGAGTATCTCCAACTAGATCGCATGGTGCTCTACCCAGATGACTCCTGTGCACCTTATATCATGCCGGCCTCAAAGAGCAGACAGAGGTGTGCCTGTCAGTGGATGGCCCTCAAGGGACATTCTGTGAGTATGTGGAGACTGTGCTCTCCAGCTGTGTTTCCCCCTTCACAGTGGGTGAAGAGGAGGAGGATCCCAAATACGGTGGTCCTGGAGCTAGCACTCTTTGACCTACATATTCTGGAATGGACTCCTGCCTATTCTCCCAACCTTGAGCTCTCTTCTTCTCCACCGGTCCCACCAGGCCTACTGGACTTTCTGGTTCTGAATAGTTCCCTGGTCCAACTTCCTCTGCTGGTCCTGCCAAGCCTCCTGGCTCGTTTGTCTTCGCTGGTCCTGTCCAACCCCCAAGCTCCTGCATTCCAACCATGGAGGTCATCCAAAGCCCCGTCATCCTCACAAGTTCCATCCAGCTTCTCGGCTCCTCCCTTTCCACTAGCTTCATTCAGATTCCACCCATGTTTCACCATCCTCATTTAGATCCTCATCTCCTCTTCTTTTTCGACCACACTGTGCTTGCACTAAAATTCTATAATTTCAATTTACGCAACACAGCTGAGATGATGACTGATGCATTTTACTAGGATAATGGGCGCCACTTAATAATTGTTCAATTACAAGTGATTTTTAAGTTATTAGTTTATGATAATCTAATCATTTACAAAACATGACTATACGTTCATAAATGATTAATAAAAGATTTATATGTTGTAAGTTATTTTAAAAAATAGTAAATCATGAAATAATCAAACAGATTGCTAGTAGATGATAAATATGTTATTAGTTGATATATTAATTGCTTACAAATCATTCAAACATTTATGTTAAAATTGTTTTAGTATCATTATCTCAATAAACAATGGTTGATCGTGAAAAAAATGATAAACCATTTGTAACGAAGCGAGACTCAGGCAGAGATCCATTTGCAAGCTTTATTATAAAAGAGCGTGGTCGTACAGGCAGGGTCAAAGCAGGGGCAAACAGGAAAAGCAGGGACAGGCAGAATCGTGGTCAGGATACCGGCAGTAGTCAGGACAGGCAGAAATCACTCACAGGTCAGGAAACAATACACAGTCCAAAGTCAGGCAGCAGAGGATCGTACACGAAAGGCAAACAGGATCAGAAACAGGCAATCAATCAATCAATCAATCAATCAATCAATACAGGAAACCGCTCAGAATTGAACACAAGGGTGAATCAAGACTTCGCAATGAGGTGGTGTGTGTGTGAGTCTTTTATAGTCCAGGTAATGCATGGCAGCTGGGTGTGGTGATTAGTGTTAGTGACTGGTGGAGTGAGTGCAGGTGATTGGCAGGGAGGATTATGGGAAGTGTAGTCCAGGAACTGACGGTGATCATGACAAGTATATTACAGTGAACAGGCAGGGACATGTTCGGTTCATTTAGTCTTCTTGTGGCCATGTCATATTAACTTGTGGGAAAGTGTAAAGTGTAAAATCATGGCCTCGAGATCCAATGTTGAGGGAATGACATCTATGTCTCTTGGCCAGGAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU399571 lncRNA upstream 126708 1557532 ~ 1560238 (+) False G350899
TU399570 lncRNA upstream 126803 1558004 ~ 1560143 (+) True G350899
TU399415 lncRNA upstream 197441 1396235 ~ 1489505 (+) True G350770
TU399508 lncRNA downstream 60248 1778667 ~ 1781774 (+) True G350850
TU399505 lncRNA downstream 103357 1821776 ~ 1826782 (+) True G350847
TU399478 lncRNA downstream 190200 1908619 ~ 1969478 (+) False G350830
TU399479 lncRNA downstream 242955 1961374 ~ 1969478 (+) True G350830
TU399481 lncRNA downstream 258726 1977145 ~ 1979294 (+) True G350831
CI01000140_01582537_01630093.mRNA mRNA upstream 56550 1582383 ~ 1630396 (+) True CI01000140_01582537_01630093
CI01000140_01550712_01553934.mRNA mRNA upstream 132779 1550712 ~ 1554167 (+) True CI01000140_01550712_01553934
CI01000140_01536330_01540225.mRNA mRNA upstream 146566 1535269 ~ 1540380 (+) False CI01000140_01536330_01540225
CI01000140_01186591_01191455.mRNA mRNA upstream 494902 1186398 ~ 1192044 (+) True CI01000140_01186591_01191455
CI01000140_01106090_01106567.mRNA mRNA upstream 580291 1106090 ~ 1106655 (+) False CI01000140_01106090_01106567
CI01000140_01807220_01815038.mRNA mRNA downstream 87280 1805699 ~ 1815769 (+) True CI01000140_01807220_01815038
CI01000140_01885335_01887127.mRNA mRNA downstream 166839 1885258 ~ 1887752 (+) True CI01000140_01885335_01887127
CI01000140_01948258_01949562.mRNA mRNA downstream 229839 1948258 ~ 1950091 (+) True CI01000140_01948258_01949562
CI01000140_02075636_02092672.mRNA mRNA downstream 356267 2074686 ~ 2093068 (+) False CI01000140_02075636_02092672
CI01000140_02121231_02124634.mRNA mRNA downstream 402812 2121231 ~ 2124639 (+) True CI01000140_02121231_02124634
TU399506 other upstream 110827 1569266 ~ 1576119 (+) True G350848
TU399412 other upstream 151372 1280388 ~ 1485928 (+) True G350770
TU399573 other upstream 161774 1515978 ~ 1525172 (+) True G350901
TU399486 other upstream 179238 1504386 ~ 1507708 (+) True G350832
TU399393 other upstream 646138 1039556 ~ 1040808 (+) True G350762

Expression Profile


CI01000140_01688652_01717386.mRNA Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.5.
End of interactive chart.

CI01000140_01688652_01717386.mRNA Expression in each Bioproject

Bar chart with 44 bars.
CI01000140_01688652_01717386.mRNA Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
End of interactive chart.