RNA id: CI01000140_01948258_01949562.mRNA



Basic Information


Item Value
RNA id CI01000140_01948258_01949562.mRNA
length 1006
RNA type mRNA
GC content 0.38
exon number 2
gene id CI01000140_01948258_01949562
representative True

Chromosome Information


Item Value
chromosome id CI01000140
NCBI id null
chromosome length 2494207
location 1948258 ~ 1950091 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GACTTTATGCTCAGACCTCTGTTGTTCACCCTTCCCACACATGACTGTGATGCCCAGCGCAGCTCAAACTATATCATCGAATTTACTGATGATAGAATGGTGGTTGCTCCACCATTGTTCATCAGGAACAATGATGAGACTGCAAACAGAACTAAGAGCTCAAGGCCAATGATAGTTCGAGTACACCATTTCCAGATTAAACAACGGACTCTTCAGCTCGCCAGAGATAAACCCCTTCTCTTTCACGGAAACAAAGTTTACATTTTCCCGGACTTCACTCAAGAGGTTGTCAAAAGAAGGATGGCTTTGGCTGATTTGAAGAAGCTGCTTCATAATGTAGCTGTCAAATACGGGCTGCTGTTTCCGGCACGACTGCAGGTGACGTTTCAGGACCAACGCTTTATTTTTGACTCTCCGGAAGAAGCGATGGGGTTCTACCATGAAAAGATCTCACCAACTCTGACTCGCGAAGTCTGAAGGTTGGGAAATGGCAAGGTTACTTTGTAAGACCTCAGTTATGTAACCTGTGTAGGCTGATAAATGCAGTTTGGTAGATTACTGGGCAGTAACTCTCTTCCATGTAATTATACCCGAGTCATTCTACGAAACGGGTGCCATTTCCACTTTGCATTTTTCAAAATTTTCATTAAGAACAAACTTTTTTTTTTAAACAAACCTACAACTTGAAAGATATGTTAACATATTTTTCCACCTCAGGCACAAAATCTTTATTGATATTATCCTTTTTATTCAGGCAAGGAAGCCATTCTTGTACCACCCCGTCACAGACAATTTGTATGCCACTGGAGTAGTAAAACAAGAAATAGATTTTTGAAATCTAATGTTTTCCTAATAGTAAAATGTTCCTTTTTTGGAAAACTATCAATAGAAAGTCTGTAATTTAATCATTTTTTTTATTCTTAGATTTTTAATCTTGAAATATGAATTTGACGTTTCAATGGCCTCATTGTTTGTACTGAAAAATGAATTCACTTAAAAAATACAA

Function


GO: NA

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU399505 lncRNA upstream 121476 1821776 ~ 1826782 (+) True G350847
TU399508 lncRNA upstream 166484 1778667 ~ 1781774 (+) True G350850
TU399571 lncRNA upstream 388020 1557532 ~ 1560238 (+) False G350899
TU399570 lncRNA upstream 388115 1558004 ~ 1560143 (+) True G350899
TU399492 lncRNA upstream 490240 1456535 ~ 1458018 (+) True G350835
TU399479 lncRNA downstream 11283 1961374 ~ 1969478 (+) True G350830
TU399481 lncRNA downstream 27054 1977145 ~ 1979294 (+) True G350831
TU399494 lncRNA downstream 36365 1986456 ~ 1988053 (+) True G350836
TU399754 lncRNA downstream 38898 1988989 ~ 2021381 (+) True G351046
TU399746 lncRNA downstream 39903 1989994 ~ 1991024 (+) False G351044
CI01000140_01885335_01887127.mRNA mRNA upstream 60506 1885258 ~ 1887752 (+) True CI01000140_01885335_01887127
CI01000140_01807220_01815038.mRNA mRNA upstream 132489 1805699 ~ 1815769 (+) True CI01000140_01807220_01815038
CI01000140_01688652_01717386.mRNA mRNA upstream 229839 1686946 ~ 1718419 (+) True CI01000140_01688652_01717386
CI01000140_01582537_01630093.mRNA mRNA upstream 317862 1582383 ~ 1630396 (+) True CI01000140_01582537_01630093
CI01000140_01550712_01553934.mRNA mRNA upstream 394091 1550712 ~ 1554167 (+) True CI01000140_01550712_01553934
CI01000140_02075636_02092672.mRNA mRNA downstream 124595 2074686 ~ 2093068 (+) False CI01000140_02075636_02092672
CI01000140_02121231_02124634.mRNA mRNA downstream 171140 2121231 ~ 2124639 (+) True CI01000140_02121231_02124634
CI01000140_02228806_02229324.mRNA mRNA downstream 278600 2228691 ~ 2229642 (+) True CI01000140_02228806_02229324
CI01000140_02283016_02291094.mRNA mRNA downstream 332885 2282976 ~ 2291420 (+) True CI01000140_02283016_02291094
CI01000140_02322058_02325171.mRNA mRNA downstream 371900 2321991 ~ 2325225 (+) True CI01000140_02322058_02325171
TU399506 other upstream 372139 1569266 ~ 1576119 (+) True G350848
TU399412 other upstream 412684 1280388 ~ 1485928 (+) True G350770
TU399573 other upstream 423086 1515978 ~ 1525172 (+) True G350901
TU399486 other upstream 440550 1504386 ~ 1507708 (+) True G350832
TU399393 other upstream 907450 1039556 ~ 1040808 (+) True G350762

Expression Profile


CI01000140_01948258_01949562.mRNA Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.2.
End of interactive chart.

CI01000140_01948258_01949562.mRNA Expression in each Bioproject

Bar chart with 40 bars.
CI01000140_01948258_01949562.mRNA Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 80.
End of interactive chart.