RNA id: CI01000140_02075636_02092672.mRNA



Basic Information


Item Value
RNA id CI01000140_02075636_02092672.mRNA
length 2345
RNA type mRNA
GC content 0.41
exon number 7
gene id CI01000140_02075636_02092672
representative False

Chromosome Information


Item Value
chromosome id CI01000140
NCBI id null
chromosome length 2494207
location 2074686 ~ 2093068 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACATAAATAAATGGAGCACATCCTAAATAACAGTGTCAAGGTCTTACCATGTTATTCTCTTTTGGTTTCTGTCTGTTATCCGTCACTGTCCATCTGTGGTTGTGTTATTGTGAACACCTGGTCTGGATGGGCTGTGGGTATTTAAGTTCCTGTTCAGTAACCAGTAGAGCTGTGGGGTTGTTCAATGCTCTTTGTTCTTCTCTTGTGTTTAGCAGGAATTGGCTCTTGGCAGATGCTCTTGGATTTGAACACCTCCACCATCATGAGATCCTGGTTTGACCCGTCTACCTCGTGGCCATGATTGAACTAGTTTTTGTCTTCTTTATTTTTTATATTTCATTATGTTTTTCCCTAGAACAAACTAAAACTATAGGCTACAATTAAAATATTATTATACGCTAAAAACAAACTATTACTTAGATGTAGGCCTAACGATGGGACTTGACCAGAAGATAAAATGTCAGATGACTCCAAGTGCATGAAGAGATTCTTTCCCGATCTAGTTTTTAGAGACTAAAACATGATTGCATCTCGACCAGACTTCACCAGCCTATCAGGAGGAAATTATGGAAATTATATTCAATAACTTCACTATAATACACTGTACTGTCACCAAATTCAGTTCACAGATCACTGCTGTCCTGATTGTTATACTACAGTACAGTGTATTACGGTCCCTTCGGTTCTCTCTCTCAGCCGTCTGCACATAGAGATCAGAACAATTGTTGGGTGTAAGGGACGATTTCTGCACAAATTTTGACTCTCTGCTACCATAGATTATTAACAGCTGAGTCTTTTTCTACTCTTATTCTATTGATATATTATTTTTGCAGCCTTGTGCCACAGATGTCTTCCTCATTTTTAATGTATTTTTAAGTGTCAAGTTGTCCACAGATTTGTTGTGAGCAGTTTCACGTAGGAACTATTTTCTTTCTACCGATAGGTCCTACATGAAACACAATAAGGTCTGTGGATTATCTTGGGGGTACACCATTTCTGTTGAAGCCCAAGATTCATCAGCAGATGACGAACATAATGAAAGTCCAAAAAGAGATGACCCCAGAACTTCAAAGTTATTGAAGTTACCCATCCCAGAATACGCCATCTTCACTGATAGTGAACGACAACACGTAAGACGTGCATACTTCGAGCAGCAGCGTCTTGGAAAAGAGGGACACTGTTGCCAAAAAGCTCATGAAACAACTTTCAAATATCTTAAGTCCTGTGAAGGCCAAACACCCTCCATCAAGAGAGCACGTCTGGATGAAGCAATGGATGAACGGCGGAGAATCACTGAGCCAAATAATTGCCGATACATTTCTGAGGTGAAAGGCAGGTGTGAGACCTTCTTCTCCAAGGTTCAGTTTTATGGTGTCATGAAGAAAGTCATGAAGCCTCCAAGGACATTAAATGGAGCTTATTGGCAGTGTCGCTGGGCTATAAAAACAGGAACATGTGCATTACCTGGGATGCGTCACTTGGTGAACTGTTGCGTCATTAACACGCTTCCGTCACTTCCCGGAACTGGATGCGAGTGCTCGAGACGAGACGGTGACTTGGCTGGAGAGCACTCCTGCCTGACTCGAGAGTTTTGCTGCAATGTCGTTTATTATCGTTTACATATATTGGGTATAGACATCGAAGAAGTGTATCATAATTTGTGCATGCAACAAAGAAGATGTGCATTTGTGGATCAGTGTAACACCACACTGGCACCGCCTCCTATAAATCCAGCAGAAGTTTCCAAGCTTCAAGCGGCATTCTTTTATCAAAGCGAGGTCCTCCAAGGTTACCAAGAGCAACTAAATAAACAACAGTCTGCTAACAAATACCTCACGCATTATATCCAGTCGCTTCCAGCCACCACGCCGAAGATGGTAAGCTTTGCTTTACCTAATAAGTTTGATGGTTCAGCGGAGCAATGCAGAGGGTTTATTCGTCAAGTTTAATTTTTTTTTTGATAATCAAGACGATCAGTTTGAGTCTGATGAAAAGAAGTGTGCCTTTCTCATGTCTTTGCTCACGGGCAAAGCTATTGATTGGGCTCCAGCGGTTTGGGAATCTGATAGATCTTTTTGGACATCTTACAGCTACTTTACTTTTTTAGCAAATCTGGGCCGTGTTTGAATATCCTGCGGGAGGCAAAGTTATTTCCTCACAGCTGCTTCATATGAGTCAAGGTAACCGCACAGCTGCTGAATACGCCATTGATTTTCGAAAGCTCGCTGCTCAGAGCGGCTGGAATGATGTCTTGCTAAAGGCTGTGTTTCAGAAAAGCTTGAACATTGAATTACAAACTTGCAAAAGGGATAACTGTTCCTTTTCTGAATATGTGACTCTAGCTA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU399749 lncRNA upstream 6935 1989994 ~ 2067751 (+) True G351044
TU399754 lncRNA upstream 53305 1988989 ~ 2021381 (+) True G351046
TU399757 lncRNA upstream 75714 1997040 ~ 1998972 (+) True G351049
TU399746 lncRNA upstream 83662 1989994 ~ 1991024 (+) False G351044
TU399748 lncRNA upstream 83662 1989994 ~ 1991024 (+) False G351044
TU399756 lncRNA downstream 14357 2107425 ~ 2184102 (+) True G351048
TU399838 lncRNA downstream 116041 2209109 ~ 2217455 (+) True G351110
TU399865 lncRNA downstream 137857 2230925 ~ 2243732 (+) True G351131
TU399922 lncRNA downstream 267911 2360979 ~ 2361807 (+) True G351176
TU399929 lncRNA downstream 301510 2394578 ~ 2448529 (+) True G351183
CI01000140_01948258_01949562.mRNA mRNA upstream 124595 1948258 ~ 1950091 (+) True CI01000140_01948258_01949562
CI01000140_01885335_01887127.mRNA mRNA upstream 186934 1885258 ~ 1887752 (+) True CI01000140_01885335_01887127
CI01000140_01807220_01815038.mRNA mRNA upstream 258917 1805699 ~ 1815769 (+) True CI01000140_01807220_01815038
CI01000140_01688652_01717386.mRNA mRNA upstream 356267 1686946 ~ 1718419 (+) True CI01000140_01688652_01717386
CI01000140_01582537_01630093.mRNA mRNA upstream 444290 1582383 ~ 1630396 (+) True CI01000140_01582537_01630093
CI01000140_02121231_02124634.mRNA mRNA downstream 28163 2121231 ~ 2124639 (+) True CI01000140_02121231_02124634
CI01000140_02228806_02229324.mRNA mRNA downstream 135623 2228691 ~ 2229642 (+) True CI01000140_02228806_02229324
CI01000140_02283016_02291094.mRNA mRNA downstream 189908 2282976 ~ 2291420 (+) True CI01000140_02283016_02291094
CI01000140_02322058_02325171.mRNA mRNA downstream 228923 2321991 ~ 2325225 (+) True CI01000140_02322058_02325171
TU399506 other upstream 498567 1569266 ~ 1576119 (+) True G350848
TU399412 other upstream 539112 1280388 ~ 1485928 (+) True G350770
TU399573 other upstream 549514 1515978 ~ 1525172 (+) True G350901
TU399486 other upstream 566978 1504386 ~ 1507708 (+) True G350832
TU399393 other upstream 1033878 1039556 ~ 1040808 (+) True G350762

Expression Profile


CI01000140_02075636_02092672.mRNA Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.06.
End of interactive chart.

CI01000140_02075636_02092672.mRNA Expression in each Bioproject

Bar chart with 25 bars.
CI01000140_02075636_02092672.mRNA Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 5.
End of interactive chart.

Homologous


species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00042787 False 2828 lncRNA 0.37 3 NC_007134.7 15479081 ~ 15483879 (+)