Item | Value |
---|---|
RNA id | TU399865 |
length | 538 |
lncRNA type | inter_gene |
GC content | 0.43 |
exon number | 2 |
gene id | G351131 |
representative | True |
Item | Value |
---|---|
chromosome id | CI01000140 |
NCBI id | null |
chromosome length | 2494207 |
location | 2230925 ~ 2243732 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
species | grasscarp (Ctenopharyngodon idella) |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU399838 | lncRNA | upstream | 13470 | 2209109 ~ 2217455 (+) | True | G351110 |
TU399756 | lncRNA | upstream | 46823 | 2107425 ~ 2184102 (+) | True | G351048 |
TU399793 | lncRNA | upstream | 149055 | 2081635 ~ 2081870 (+) | True | G351080 |
TU399749 | lncRNA | upstream | 163174 | 1989994 ~ 2067751 (+) | True | G351044 |
TU399754 | lncRNA | upstream | 209544 | 1988989 ~ 2021381 (+) | True | G351046 |
TU399922 | lncRNA | downstream | 117247 | 2360979 ~ 2361807 (+) | True | G351176 |
TU399929 | lncRNA | downstream | 150846 | 2394578 ~ 2448529 (+) | True | G351183 |
TU399936 | lncRNA | downstream | 159307 | 2403039 ~ 2427246 (+) | False | G351188 |
TU399938 | lncRNA | downstream | 159307 | 2403039 ~ 2427246 (+) | True | G351188 |
TU399949 | lncRNA | downstream | 162634 | 2406366 ~ 2469539 (+) | True | G351191 |
CI01000140_02228806_02229324.mRNA | mRNA | upstream | 1283 | 2228691 ~ 2229642 (+) | True | CI01000140_02228806_02229324 |
CI01000140_02121231_02124634.mRNA | mRNA | upstream | 106286 | 2121231 ~ 2124639 (+) | True | CI01000140_02121231_02124634 |
CI01000140_02075636_02092672.mRNA | mRNA | upstream | 137857 | 2074686 ~ 2093068 (+) | False | CI01000140_02075636_02092672 |
CI01000140_01948258_01949562.mRNA | mRNA | upstream | 280834 | 1948258 ~ 1950091 (+) | True | CI01000140_01948258_01949562 |
CI01000140_01885335_01887127.mRNA | mRNA | upstream | 343173 | 1885258 ~ 1887752 (+) | True | CI01000140_01885335_01887127 |
CI01000140_02283016_02291094.mRNA | mRNA | downstream | 39244 | 2282976 ~ 2291420 (+) | True | CI01000140_02283016_02291094 |
CI01000140_02322058_02325171.mRNA | mRNA | downstream | 78259 | 2321991 ~ 2325225 (+) | True | CI01000140_02322058_02325171 |
TU399506 | other | upstream | 654806 | 1569266 ~ 1576119 (+) | True | G350848 |
TU399412 | other | upstream | 695351 | 1280388 ~ 1485928 (+) | True | G350770 |
TU399573 | other | upstream | 705753 | 1515978 ~ 1525172 (+) | True | G350901 |
TU399486 | other | upstream | 723217 | 1504386 ~ 1507708 (+) | True | G350832 |
TU399393 | other | upstream | 1190117 | 1039556 ~ 1040808 (+) | True | G350762 |