RNA id: TU399922



Basic Information


Item Value
RNA id TU399922
length 352
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G351176
representative True

Chromosome Information


Item Value
chromosome id CI01000140
NCBI id null
chromosome length 2494207
location 2360979 ~ 2361807 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTCTTAATGAGTGAGCCACTGAGTCATTTATTCAAACGATTCCTTCAAAAGGCTGAATCAAGAATGAAGCAGTTGTTTATGACTGGGCCATTGAATCTTCACTCAACCGATTCGTTCAAATCGCTGAATCATTTGAAACGGCTGAGTGTAGCTGCGAGATGCGCTGATTCTGCTTTGTTTGGAACTATTTTCGCTGCAACAATATAACAAAAAACAGGCAATATTGCACCTAAAACGTAAGTGATTAATATTAACTACTTGTTTATTGAACTGTTGTATGAAATTAGTGTCAATTTCAATCGAGGTGATATTCAGGAATTCAGCACTTTCGGTCGTGTGATGCTTAACTTTA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU399865 lncRNA upstream 117247 2230925 ~ 2243732 (+) True G351131
TU399838 lncRNA upstream 143524 2209109 ~ 2217455 (+) True G351110
TU399756 lncRNA upstream 176877 2107425 ~ 2184102 (+) True G351048
TU399793 lncRNA upstream 279109 2081635 ~ 2081870 (+) True G351080
TU399749 lncRNA upstream 293228 1989994 ~ 2067751 (+) True G351044
TU399929 lncRNA downstream 32771 2394578 ~ 2448529 (+) True G351183
TU399936 lncRNA downstream 41232 2403039 ~ 2427246 (+) False G351188
TU399938 lncRNA downstream 41232 2403039 ~ 2427246 (+) True G351188
TU399949 lncRNA downstream 44559 2406366 ~ 2469539 (+) True G351191
TU399954 lncRNA downstream 48142 2409949 ~ 2476753 (+) False G351193
CI01000140_02322058_02325171.mRNA mRNA upstream 35754 2321991 ~ 2325225 (+) True CI01000140_02322058_02325171
CI01000140_02283016_02291094.mRNA mRNA upstream 69559 2282976 ~ 2291420 (+) True CI01000140_02283016_02291094
CI01000140_02228806_02229324.mRNA mRNA upstream 131337 2228691 ~ 2229642 (+) True CI01000140_02228806_02229324
CI01000140_02121231_02124634.mRNA mRNA upstream 236340 2121231 ~ 2124639 (+) True CI01000140_02121231_02124634
CI01000140_02075636_02092672.mRNA mRNA upstream 267911 2074686 ~ 2093068 (+) False CI01000140_02075636_02092672
TU399506 other upstream 784860 1569266 ~ 1576119 (+) True G350848
TU399412 other upstream 825405 1280388 ~ 1485928 (+) True G350770
TU399573 other upstream 835807 1515978 ~ 1525172 (+) True G350901
TU399486 other upstream 853271 1504386 ~ 1507708 (+) True G350832
TU399393 other upstream 1320171 1039556 ~ 1040808 (+) True G350762

Expression Profile


TU399922 Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
End of interactive chart.

TU399922 Expression in each Bioproject

Bar chart with 40 bars.
TU399922 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 80.
End of interactive chart.