RNA id: TCONS_00000152


Basic Information

Item Value
RNA id TCONS_00000152
length 3643
RNA type mRNA
GC content 0.51
exon number 22
gene id XLOC_000079
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 6817292 ~ 6925407 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATACAGTGACGAAGACGGTGTGTGCGGAGCAGTGTGACGGTCGCTGTTTTGGGCCATATGTCAGTAACTGCTGTCATCGTGAATGTGCAGGAGGCTGTTTCGGACCCAAAGACACCGACTGCTTCGCTTGCACCAACTTTAATGACAGTGGCGCCTGCGTGACTCAATGTCCTCAACCATTCGTCTACAATCCAACGACCTTCCAGCTCGAGCACAATCCCAATGCCAAATACACCTATGGAGCTTTCTGTGTCAAGAAATGCCCGCATAATTTTGTTGTGGACCACAGCTCTTGTGTCAGAGCCTGTCCGAGCAACAAGATGGAGGTGGAGGAAAATCAGACCAAGATGTGCATCCCCTGCACTGACATCTGCCCGAAAGTGTGTGATGGAATAGGAACCGGCAGTCTTCAAATGGCTCAAACAGTCGATTCCAGTAACATTGAGAAGTTTGTCAACTGCACCAAGATTAATGGCAACCTAATCTTCCTTATTACAGGCATCAAAGGGGACATGTTTCATGGAATCCGAGCTCTGGATCCTGATCGGTTAAATGTTTTCCGCACCGTCAGAGAGATCACAGGTTTCTTGAATGTTCAGTCTTGGCCGGAGAACATGACGGATCTTGGCGTTTTCTCAAACCTTGCCACCATTGGAGGACGGTCTCTTTACAGTGGTATTTCTCTGCTGATCCTAAAGCAGCGCTGGATCACATCTCTGCAGTTTCAGTCTCTGAGAGAGATCAGCGCCGGTAACGTCTACATGACCAACAACAGCCAGCTCTGCTTCTACAGCACAGTCAACTGGACATCTCTGTTTCGCACCAGCACCCAGCGAGCCCTGATCAAAAACAACAGAGAGCCCAGAGAGTGCTCTAAAGAGCAGAAGATATGTGATCCACTGTGTTCAGAGGCTGGATGTTGGGGTCCTGGTCCAGACCAGTGTCTGTCCTGCAAATACTTCAGCCGAGGAAAAACTTGTGTCAAGTCCTGTAACTTGTATTACGGTGATGTTCGAGAGTTCGCCAACGGCTCGGTGTGTGTGGAGTGTGACAGCCAGTGTGAAAAAGCTGGAGAGAAAGGTTTAACCTGCCATGGCCCGGGTCCAGATCACTGTGTGAAGTGTCTGCATCTCAAAGACGGGCCCAACTGTGTGGAGAAATGCCCTGACGGTCTGCAGGGAGCAAACAGCTTTATCTTCAAATATGCTGAGACCAACAACGAGTGCCATCCCTGCCACCCCAACTGCACCCAAGGCTGTACTGGACCCCGGATACAAGACTGTGTTGGCATCTTGGACAGGACTCCTCTGATTGCTGCTGGATTAATTGGGGGTCTCTTTGTAATAGTCATCATAGCTCTCGGTGTGGCTGTTTACATCCGCCGAAAGAGCATCAAGAAAAAAAGAGCCTTACGTCGATTCCTGGAAACCGAGTTGGTGGAGCCCTTGACGCCCAGCGGTGCAGCACCAAACCAGGCTCAGCTGCGCATCTTGAAGGAAACGGAACTCAAGAGGGTCAAGATTCTGGGAGCTGGAGCCTTTGGCATGGTCTATAAGGGAATCTGGGTTCCAGAAGGGGAAACAGTGAAGATTCCTGTGGCCATAAAGATACTCAATGAAAGCACTGGACCAAAAGCCAATGTGGAGTTCATGGATGAGGCGCTGATCATGGCCAGTATGGAGCATCCTCATCTGGTGCGTCTTTTAGGGGTCTGCTTGAGTCCCACTATTCAGCTGGTCACTCAGCTCATGCCCCACGGCTGCCTGCTGGACTACGTTCATGAACACCAGGACAACATCGGCTCACAGCTGCTGCTCAACTGGTGTGTGCAGATCGCAAAGGGTATGATGTATCTGGAGGAGAGACGGCTGGTGCACAGGGATCTTGCAGCTCGTAACGTTCTGGTTAAATCTCCAAACCACATTAAGATCACTGACTTTGGCCTCGCTCGACTGCTGGACACTGATGAAAAGGAGTACAATTCAGATGGAGGGAAGATGCCTATCAAGTGGATGGCACTGGAGTGCATTcattacagaaagttcacacatcaGAGTGATGTATGGAGTTACGGAGTGACTATCTGGGAGCTGATGACGTTTGGAGGAAAGCCTTACGACGGGATTCCCACACGGGACATTCCAGACATCCTGGAGAAAGGCGAACGTTTGCCTCAGCCGCCCATCTGCACCATTGACGTCTACATGGTCATGGTTAAATGCTGGATGATTGATGCTGATAGTCGTCCACGTTTTAAAGAACTCGCTGCAGAGTTCAGCCGTATGGCACGAGACCCGCAGAGATACCTCGTCATACAGGGCGATGATAGGATGAAGCTGCCCAGCCCAAACCACAGCACATTCTTTAAGAGTCTTCTAGATGAGGAGGAGCTGGATGACCTGATGGATGCTGATGAGTACCTGGTTCCTCAGACCTGCAATATCTCTACCTCTACTTACACGTCACGCACAACAATGGATGCCAGCTGGACTCTGAGGTGTCGTGACAGGGTTTTCAGTCCTGAAGACGGGATGGGGGCTTGTTCTCGTGATGTTCCTGCTTCAGcgagtgctgtgtttgttcctgtgaGCACTCAAGCTGCGGGACTGAACGTTCTAGAGGAACAGCACTGTAACGGGAGCCTGAAGAAGCAGCAGCCCATGTCAGGATCAGGGGATGACTGCGATGGCCAGCGCTACAGTGCAGACCCGACCGTCTTTCTCGGCGAGAGGAGTCTGAAAAACACAGACGAAGATGGATACATGAGCCCTATGAACAAGTCAACCTCAGACCATCTCAGTCCTGTCGAGGAGAATCCTTTCGTAAACCATCGGAAAAATGGAAACATTACTGCACTGGACAACCCGGGTTACCACAGCACACCTGACAAAAAATCCAAAGCCGAAGAAGACGAATACATCAACGAACCCCTTTACCTCAACGCATACAACACCACCGGTGGGACAAACCTGGAGATCATGAGGCGAAATGGATCCTCCATCCCTCTACAGATGACAACAGCGACCAGCGCCGCGAGCAGCCACATTATCCTCTCCACACAACCAGGAAAAGCCCATCACCACGGCCAGGGAACACATGTTCATTTCGCCATCCCACCTGTTCAACCCCCCCAAACCAGAGCGATGAGCCAAAACGGCCAGCATTCCCAGTCTTCACACGCCGTCGAGTCCAATTCCTCAAGCATGTCCGCCAATCCCTCTTTATTATCCCAAATCTCTCTCGTCAGTCAACAGATCCAACCTTGTCTGGCGAGTCAGTCTCAAGTACCGAAATCCACAGTCCCAAATAAAAGCATATCCGGCCTTCCTGGTCACCTCGTTTACCCGGTTAACATGCTTCAAACAGGACACACTGGGACTGTAATGGCTGATAGGAAGTCCAAGAAGAATTTCGATAATCCTGATTATTGGCAGCACAGTTTGCCTCCAAAGGTGACCCAAGCGAACCCTCAAGACCCAACGCAGACGTGCAAAAGCAAACACCTGTACAGACACAGCATTCGGAGTCGTTTGGCCGTGGCTGATAACCCGGAGTTCGTATCGGAGTTTAATAAGAGACCAGGACCGGTTCTGCCACCTCCGCCATACCGGCACAGGAATACGGTTGTGTAACGTCCAGGCC

Function

GO:

id name namespace
GO:0033674 positive regulation of kinase activity biological_process
GO:0007275 multicellular organism development biological_process
GO:0006468 protein phosphorylation biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0016310 phosphorylation biological_process
GO:0048699 generation of neurons biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0009925 basal plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0005154 epidermal growth factor receptor binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030918-4 Predicted to enable epidermal growth factor receptor binding activity and transmembrane receptor protein tyrosine kinase activity. Acts upstream of or within generation of neurons. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in basal plasma membrane. Predicted to be integral component of plasma membrane. Is expressed in heart and nervous system. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis type 19; colorectal cancer; esophagus squamous cell carcinoma; hepatocellular carcinoma; and lung adenocarcinoma. Orthologous to human ERBB4 (erb-b2 receptor tyrosine kinase 4).

Ensembl:

ensembl_id ENSDART00000182953

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003024 lncRNA upstream 101987 6759183 ~ 6760930 (+) True XLOC_000077
TCONS_00000148 lncRNA upstream 194578 6665033 ~ 6668339 (+) True XLOC_000076
TCONS_00003022 lncRNA upstream 308447 6379878 ~ 6554470 (+) True XLOC_000072
TCONS_00003023 lncRNA upstream 459694 6398210 ~ 6403223 (+) True XLOC_000073
TCONS_00000137 lncRNA upstream 666154 6189997 ~ 6196763 (+) False XLOC_000068
TCONS_00000153 lncRNA downstream 31800 6956913 ~ 6990027 (+) True XLOC_000080
TCONS_00000155 lncRNA downstream 167160 7092273 ~ 7095474 (+) False XLOC_000082
TCONS_00000156 lncRNA downstream 167160 7092273 ~ 7115914 (+) True XLOC_000082
TCONS_00003025 lncRNA downstream 587416 7512529 ~ 7512762 (+) True XLOC_000084
TCONS_00000159 lncRNA downstream 592336 7517449 ~ 7523930 (+) False XLOC_000085
TCONS_00000146 mRNA upstream 198794 6646572 ~ 6664123 (+) False XLOC_000075
TCONS_00000145 mRNA upstream 199991 6646529 ~ 6662926 (+) False XLOC_000075
TCONS_00000147 mRNA upstream 200096 6646616 ~ 6662821 (+) True XLOC_000075
TCONS_00000144 mRNA upstream 216561 6640437 ~ 6646356 (+) True XLOC_000074
TCONS_00000143 mRNA upstream 496851 6357059 ~ 6366066 (+) True XLOC_000071
TCONS_00000157 mRNA downstream 264743 7189856 ~ 7448084 (+) False XLOC_000083
TCONS_00000158 mRNA downstream 489205 7414318 ~ 7448795 (+) True XLOC_000083
TCONS_00000160 mRNA downstream 592341 7517454 ~ 7539716 (+) False XLOC_000085
TCONS_00000163 mRNA downstream 613796 7538909 ~ 7550654 (+) False XLOC_000085
TCONS_00000164 mRNA downstream 615865 7540978 ~ 7550899 (+) False XLOC_000085
TCONS_00000149 other upstream 75113 6787690 ~ 6787804 (+) True XLOC_000078
TCONS_00000134 other upstream 677385 6182342 ~ 6185532 (+) False XLOC_000067
TCONS_00000123 other upstream 1360833 5497285 ~ 5502084 (+) True XLOC_000062
TCONS_00000120 other upstream 1375755 5437390 ~ 5487162 (+) False XLOC_000062
TCONS_00000154 other downstream 138724 7063837 ~ 7063943 (+) True XLOC_000081
TCONS_00000208 other downstream 2228981 9154094 ~ 9155273 (+) False XLOC_000113
TCONS_00000209 other downstream 2229880 9154993 ~ 9155521 (+) False XLOC_000113
TCONS_00000213 other downstream 2293535 9218648 ~ 9221616 (+) True XLOC_000115
TCONS_00000230 other downstream 3126661 10051774 ~ 10054771 (+) False XLOC_000126

Expression Profile

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