RNA id: TU406244


Basic Information

Item Value
RNA id TU406244
length 1202
lncRNA type sense_over
GC content 0.46
exon number 1
gene id G356316
representative False

Chromosome Information

Item Value
chromosome id CI01000147
NCBI id null
chromosome length 707134
location 248516 ~ 249717 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

NNNNTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATTTCCTCTGTGTTCGCTGGTTTAATGTTGATATATTAGTGAGTAATTTGCTCAGGCAGCAGAGGGGCACATAATGGGCTCACCAGGTTTTTTAAAATGATGGAAAATGTGGCCTGCTCTCATCCTGCATTTGCTTATGATGAATATTACATCCAGAGGTGATGTGTGGAATAAAATGAAAGCGAGAGAGAGAGAGAGAGAGAGAGAGAAACATCCTGCAAAAGTCCTCATTAACAACAGCTGCCTTCCACGACCCTCTCTTATTTTCTCTCTTGTTTTCTGTTTGTTTTGTGTTCGTCTAACCCGGGCTGCCTGCGGCCCGCTCTCATGTGATGTTTATGGTTTGTTGAAGAAATGCCGTAAACCTGGCCGTGTTAAAGCTGAATGAGCAGGGGCTGTTGGACAAATTGAAAAATAAATGGTGGTACGACAAGGGCGAATGTGGCAGCGGGGGCGGGGACTCGAAGGACAAGAGCTCGCAGGCGCTGAGCCTAAGCAACGTGGCGGGAGTTTTCTACATCCTGGTGGGCGGCCTGGGTCTGGCCATGCTGGTGGCCCTGGTCGAGTTTTGCTATAAGTCCCGCGCCGAGGCCAAGAAACTGAAGCTCACCTTCTCGGAAGCCATGAGAAACAAGGCCCGCTTGTCAATCACGGGCAGCCTGGGGGAAAATGGGCGTGTCCTGACGCCAGACTGCCCTAAGGCCGTGCGCTCTGGCCCCTCCTTCCGACACGGCCCCGCCCTCGCTGTGGTGTCCTCCGACCTCCCATAGAAACCAAAAACTCACCTTGTGCCTTAAACCATCTTACCCCTCTACCGAAGTTCAGATTCACGCAACCACGGGAGAGCCACGTCGTCGCCGGCTTGTGCTAACGAGGACTCGGACGTGACAGACCTGAAAAGAAACAACAATTCACACTCTTTCAGCCCTCGGGAAAGACGTCAACAATTGTAAACGAGTTGGGACGGCACAGATACGAACGTTTTGACATTGTCGCGCATCAAGGATCCATGATGCCTTATCCTGAAGGGGACAAACATCATCGCCGAAGAATCACGTAGAAGACCAGTAAACTGTAAATGTAAAGACATTAGCTGCGCTTCCGTGTTTAGCCGTCCGACATCAGCAAACCTGCATTAGACATATTAACTCACTCGAGCGCAAAACGGCATATTTACGACATGGTCCACGATCACTAGCTGTATTTACTAAACCGTATGTAGATATTCTCTCAGGAGCCACGAAGGGGGACATCTTTTATCATCTCGACGGGATTTCTTCAAGAAGCCACTGGGAGCCGCTTGCTTTTTTGGACTGAAATGTAAATAGACCAGTAGTAAAAGCTGAACACGATTCTTTTATAAAGCATCTTAGGTAATAATTCATTGCAATAATGACTATAGGGAGACCTGACTTGTAATTAAGAGATCTTTTATAAACACACAGTATTATATATACAGAAACAGATCTATATAATAGAGGGACATCTGAACTAAATCAGCTCAGTTGTGTGTGAGACCATGGCATCTGTTCTGTTAACAGTTGTTTTGATAACCGATGTAACGCAGTGTGTACGTGTCTTTTGTCCTTAATGAATGTCCACGCATTTCACATGTCGCACAAACACACGAGTGTATGTGAACGCCGCACCGCATCGCACACACCAGGATCGACTCCTGATTCTCACCTTTGGTGTTTGGTTTTGTTTTTGCGTTCTTTTGTTTTTCTCTTTGTACCCACCAATTCAAATAAAACTGGAACATTTATACAATAAATGAACATCTTTTTCCTTTTTAATTCATTAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU406212 lncRNA downstream 31068 212997 ~ 217448 (-) True G356294
TU406259 lncRNA downstream 46168 201193 ~ 202348 (-) True G356325
TU406219 lncRNA downstream 117576 130401 ~ 130940 (-) True G356301
TU406215 lncRNA downstream 122323 125875 ~ 126193 (-) True G356297
TU406204 lncRNA downstream 122841 125090 ~ 125675 (-) True G356291
TU406274 lncRNA upstream 6645 263515 ~ 284349 (-) True G356337
TU406287 lncRNA upstream 86350 343220 ~ 344064 (-) True G356348
TU406307 lncRNA upstream 142905 399775 ~ 411940 (-) True G356365
TU406304 lncRNA upstream 160765 417635 ~ 419539 (-) True G356364
TU406313 lncRNA upstream 162882 419752 ~ 420378 (-) True G356368
CI01000147_00231088_00236774.mRNA mRNA downstream 11742 231057 ~ 236774 (-) True CI01000147_00231088_00236774
CI01000147_00426318_00471016.mRNA mRNA upstream 169448 426318 ~ 471016 (-) True CI01000147_00426318_00471016
CI01000147_00482393_00489991.mRNA mRNA upstream 225523 482393 ~ 489991 (-) True CI01000147_00482393_00489991
CI01000147_00491199_00512572.mRNA mRNA upstream 234329 491199 ~ 513215 (-) True CI01000147_00491199_00512572
CI01000147_00546348_00552951.mRNA mRNA upstream 287297 544167 ~ 552951 (-) True CI01000147_00546348_00552951
CI01000147_00586020_00603643.mRNA mRNA upstream 328978 585848 ~ 606212 (-) True CI01000147_00586020_00603643
TU406180 other downstream 197617 48047 ~ 50899 (-) False G356274
TU406141 other downstream 208674 14927 ~ 39842 (-) True G356249

Expression Profile