RNA id: CI01000147_00586020_00603643.mRNA


Basic Information

Item Value
RNA id CI01000147_00586020_00603643.mRNA
length 3260
RNA type mRNA
GC content 0.45
exon number 4
gene id CI01000147_00586020_00603643
representative True

Chromosome Information

Item Value
chromosome id CI01000147
NCBI id null
chromosome length 707134
location 585848 ~ 606212 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATAGATGCATAAGGCAAGTACCATGCATGGATGCTTTACTTGTATGGACCTCAAATGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGTGTGTGTGTGCATGTGTCTGTGTGTGTGTGCACAAGTACTACTGGCCTACTCAGCGGAGACTATAGATAGACATCCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCAGTGATAAAATAATCAGTGTTGTGTGATGAAGGTTGAATGATGTATCTGGGTCACAGTGATTGGCCTCTTTACTGGAGACTTCAGAAGCGATCTCTCAGCACCTGACAGCTCTGTGTATTCGATAAGGTATCGGTACCTGAGTCAGCAGCAGTGGCAGCTGCTCTATCACCGCCATCCGTCAGAGATCAGAGCCGCGGGGCGTCCGTCGCTACACCTACTCGCGCAAATTAACGCTGTTCATCATAAAAAGCAATCACATGAAGCCAAACCATCCATAAATGTAATTATCAAACTGCATTTGAAATGCCCTAATTTAACTTTTTTCCTAATGATACTGTCTCAGGAATGTTGTTTGTTTACAAGGTTCTGCATTGTAATGATTTATTTGCAACAACTCGCGAGCGGTGTGAAATGACTTTTTTGCGCTGAATCTGCTCGGATTTTTCTTAAATTTGGGGCAGGATACATTAGCCAAGCCTGCGAGATGACCATGGGAATCTGTCCAGTGAGAAACACCATTTCAGGCTATGTTTACATTCATCTGGATACATTTGAAAACGCCGTTTTTGTTTCAAAACGCTCTCTGTCCACTCTGTATATTCATATATAAGTGAAAGGGCTCCTCGAAAAAGAACAAATGTAGGGCGGGGCTTGATTTTGTCTGTGAGGAATTGATTGGATGGTTGTGGTTTGCTATTGGTGGATCTCATGTGAGTGACAGGTTGCCCCGCCCTCGTCATCAGAGAAGAGAAGAGATGCTGCAAGAGGGAGGGGAAGTTATTTTGACTAAGGGGCCATTTACACGACACCGTTTTCAACTAAAAACTTTTTATGTGTTTTGGCCGTTCATTTACACAACAACAGTGTTTTGAGGGCCTGTAAACGCAATTTAAAAAAAAAAAATGATACTGTTATTGTCTCGGTGTAAAGTGACATCGCCATCTACTGGCATGGCAGCAGAATACAGCGTTTTCAGTCACTTTCGCGGAACTGTGTCAATGGGAATTGTTTTGACAACGTTGTCGTCTGTACACGAAAAAAGCAAAGGAAAAACTTTTTAGTTTTTTGTAACATTGTTTACGTGTAAATGTATCCTTAGTCATAGGGGCCATTTGCACGACACCGTTTTCAACTAAAAACGGAAAACTTTTCATGTGTTTTGGCTGTTCATTTACACGACTAATGCGTTTTGTGGGCATGTAAATGCAAATTTTTGAAAACGGGTTTCAAAGTGTGAGTTTTTGAAAATGATACCATAATATACGTATTACGTGTTCAATCTATAGGTGCGTAATGTTTCTTTACAAAGTGACATCGCCATCTACTGGCATGGCAGCAGAATACAGCATTTTTAGTCACTTTCGTGGAACTGTGTGAACGGGAATCGTTTTGACAACATTTGTCGTCTTTACACGAGAAACGCAAAGGAAAAATGTTTCCGTTTTTTGTACATCATTGTCTGTATGCGAAAAATGCAAAGGAGAATCTTTTCCATTTTTAGTACATCATTGTCATGTAAACGCACCCTAAAGATTATGAGGCACATGAATTTAAAATAAATAAATAATGATGTTCACTGATAAATCATTTATAATAAATACTGCAGTATCCCATAAAAAATAAGAAGCGTCCATTTTGATTTCATGGTGACTTTAAAACCCAAGTTTTGTTTCTGCGAGTTGTGCTCCCCGTGCGACTGTGTCATTTTTCGGGAAAGCTGTTGCTGTGACCTCCCCCCTCTGTTCTCAGCCGAGCCTCTCTCCTTCTCTTTTTCCTTCTATCCGACCCCACACACACACACACACACACACACTACTCCCCCCTCCCGTGTCTCTCTTTCCCTCAGCATCATTCTGAGCTTCATCTATTCGACTGGAATCACACAAAATGCATTCTCGCTTTCTCGGTTAGAAACCACAGTATTGGATCTGCTTTGAGGCTTTTCCCTGCACTGGATCTCAGATGCCAGTAACGGACTATGGACAGAAATGGGATGAGGGCTGCAACATGTTGAGGACAAACCGGACCTCACGGATGGGTCACTGATGAGAACTTAACGTCGACCCTGATTTCAGCTGCACATTTTGGACAGAAGCTCTACATATCATGAATAACTGACGGTCCCGTTAGGACTCTAAATTTTGGACGGTCTCTGTGTTGTTATGTGGTCTAATTGTGCGGTTATGTAACTCTAAGTGCTTTCCGTGGTAAGTAACCGAGTCTATCGGTATCGCTCATGCTCCGGTGCATGCCTGCACGAGAGAAGCGCGCGCGCTCGCTCCCTCGCGCCGGTGGTCTGCACCGTGAATCTGCACCGAATCTGCACGATCGTCCCCACATCGACCGGACGCGCGTCCCTCCGTCTCCCGTGAGATGGCCGCGGCGATCGCCAGCTCGCTCATCCGACAGAAACGGCAGGCGCGCGAGTCAAACAGCGACCGTGCGGCGACCGGTAAGCGCCGCTCCAGCCCCGCCAAAGAGCCCTCCGGACGAGGCTCCCTGTGCGACCGGCACCTGTTCGGACTCTTCGGTAAAGTCCGATTCTGCAGCGGGAAAAAACGACCCGTGCGCCGGAAACCAGCTCTGTTTAATCTGATCCCAGTGGGTTTGCGGGTCGTGGCGATTCAGGGTGTGAAGGCTGGACTCTACGTAGCCATGAATGGAGAAGGTTTCCTGTACTCTACGTGTGTCTTTACAAGTTGCAGTGTGTTAATACTGTGTGTGAGGAGGTGTGGTTCGAGTTTTATCGGATTTACTGCAGTGTGTATGTATAAGGAGCCGTCGCTGCATGAAATTGACGAGAAGCAGCGGTCCAGGAAAAACTCAGGAACTCCCACTATGGGCACCAGGAAAGAGTTGAACCAGGACTCTACCGATCATGAAGGCTCATAGCCACACACACACACACACACACACACACTGACCTGTAAATGTACACACACACACTCACACACACGGTGACCCCTGGAGCTGAATGCTTTCTTACACCCCAACAAACAACAGCAACTTCAGCATCGACAAACATCAAACGAAACAAATATTAATGAAGTAACATGAGAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU406335 lncRNA downstream 1749 582941 ~ 584099 (-) True G356384
TU406313 lncRNA downstream 165470 419752 ~ 420378 (-) True G356368
TU406304 lncRNA downstream 166309 417635 ~ 419539 (-) True G356364
TU406307 lncRNA downstream 173908 399775 ~ 411940 (-) True G356365
TU406287 lncRNA downstream 241784 343220 ~ 344064 (-) True G356348
TU406344 lncRNA upstream 10008 661363 ~ 661564 (-) True G356390
TU406329 lncRNA upstream 46475 652687 ~ 656083 (-) False G356382
TU406330 lncRNA upstream 46475 652687 ~ 656083 (-) True G356382
TU406382 lncRNA upstream 63611 669823 ~ 670087 (-) True G356423
TU406339 lncRNA upstream 68985 675197 ~ 677479 (-) True G356386
CI01000147_00546348_00552951.mRNA mRNA downstream 32897 544167 ~ 552951 (-) True CI01000147_00546348_00552951
CI01000147_00491199_00512572.mRNA mRNA downstream 72633 491199 ~ 513215 (-) True CI01000147_00491199_00512572
CI01000147_00482393_00489991.mRNA mRNA downstream 95857 482393 ~ 489991 (-) True CI01000147_00482393_00489991
CI01000147_00426318_00471016.mRNA mRNA downstream 114832 426318 ~ 471016 (-) True CI01000147_00426318_00471016
CI01000147_00252331_00335060.mRNA mRNA downstream 250788 252147 ~ 335060 (-) False CI01000147_00252331_00335060
CI01000147_00614373_00614621.mRNA mRNA upstream 7575 613787 ~ 616428 (-) False CI01000147_00614373_00614621
CI01000147_00631877_00639420.mRNA mRNA upstream 24372 630584 ~ 639420 (-) True CI01000147_00631877_00639420
CI01000147_00700597_00701633.mRNA mRNA upstream 93914 700126 ~ 702455 (-) True CI01000147_00700597_00701633
TU406246 other downstream 328978 248563 ~ 256870 (-) False CI01000147_00252331_00335060
TU406180 other downstream 534949 48047 ~ 50899 (-) False G356274
TU406141 other downstream 546006 14927 ~ 39842 (-) True G356249

Expression Profile