RNA id: TU406183


Basic Information

Item Value
RNA id TU406183
length 1352
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G356275
representative True

Chromosome Information

Item Value
chromosome id CI01000147
NCBI id null
chromosome length 707134
location 53475 ~ 60016 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGATAAAGATATATTAAACAAAAGAATCTTTAATATAAGTCCAAAAGGAAACACGCAGGAGATAACTAAGACTAAAAAAAAACAACTACGTTAAACATTGACGACACAGAACACTAAAAAAGGAAACTGAGGACTATATACACACAGGCAAACAAAGGGAGCTGAATGAAACACAGGTGAAACTAATCAGTAACACACTGTAACAAACTGGGAAACTAGGTCAGTTAGCAATGACAGGGAACATAGTAGAGATACAAAGTCCAATTTGTTTTCGTGAGCCGGTTCTTTTTAGACAGTTTGGCTCAATGAAACGGTTCAAAAAGCTGCTTATAACATGCAGCTATAACAGCTTTAACTCTTCTGGGAAGGCTTTTCCCAAGGTTTAGAAATGTGTTTAAGGGAATTTTTGACCATTCTTCTAGAAGTGCATTTGTGAGGTCAGGCACTGATGTTGGACGAGAAGATCTGGCTCCCAGTCTCCGCTCTAATTAATCCCAAAGGTGTTCCATCGGGTTGAGGTCAAGACTTTGTGCAGGCCAGTCAAGTTCCTCCACACCAAACTCGCTCATCCATGTCTTTATGGACCTTGCTTTGTGCACTGGTGCGCAGTCATGTTGGAACAGGAAGGGGCCATCCCCAAACTGTTCCCACAAGGTTGGGAGCATAAAATTGTCCAAAATGTCTTGGTATGCTGAAGCATTAAGAGTTCCTTTCACTGGAACTAAGGGGCCAAGCCCAACCTTGGCAACCGCCAAACCCAGACTCGTCCATCGGATTGCCAGACAGAGAAGCAGTTTCGTCACTCCAGAGAACACGTCTCCACTGCTCTAGAGTCCAGTGGCGGCGTGCTTTACACCACTTAATTAGACACTTTGCATTGCACTCAGTGATGTAAGGCTTGGATGCAGCTGCTTGGCCATAGAAACCCATTCTATGAAGCTCTTTATGCACTGTTCTTGAGCTAATCTGAAGGCCACACGAAGTTTGGAGGTCTGTAGCTATTGACTTTGCAGAATGTTGGCGACTGCTGCGCACTGTGCGCCTCAGCATGCGCTGACCCCGCTCTGTGATTTTACGTGGCCGACCACTTCGTGGCTGAGTTGCTGTTGTTCCCAATTGCTTCCACTTTGTTATGATACCACTAACAGTTGACCGTGGAATATTTAGTAGTGAGGAAATTTCACGAATGGACTTATTGCACAGGTGGCAACCTATCACAGTACCACGCTCGAATTCACTGAGCTCCTGAGAGCGACCCATTCTTTCACAAATGTTAGTAGAAGCAGTCAGTATGCCTAGGTGTTTGATTTTATACACCTGTGGCCGTGGAAGTTATCTCTTCCACCTCCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU406181 lncRNA downstream 2692 50501 ~ 50953 (-) True G356274
TU406186 lncRNA upstream 3794 63810 ~ 64036 (-) True G356276
TU406194 lncRNA upstream 17476 77492 ~ 77718 (-) True G356281
TU406167 lncRNA upstream 22131 82147 ~ 109196 (-) True G356261
TU406204 lncRNA upstream 65074 125090 ~ 125675 (-) True G356291
TU406215 lncRNA upstream 65859 125875 ~ 126193 (-) True G356297
CI01000147_00231088_00236774.mRNA mRNA upstream 171041 231057 ~ 236774 (-) True CI01000147_00231088_00236774
CI01000147_00252331_00335060.mRNA mRNA upstream 192131 252147 ~ 335060 (-) False CI01000147_00252331_00335060
CI01000147_00426318_00471016.mRNA mRNA upstream 366302 426318 ~ 471016 (-) True CI01000147_00426318_00471016
CI01000147_00482393_00489991.mRNA mRNA upstream 422377 482393 ~ 489991 (-) True CI01000147_00482393_00489991
CI01000147_00491199_00512572.mRNA mRNA upstream 431183 491199 ~ 513215 (-) True CI01000147_00491199_00512572
TU406180 other downstream 2746 48047 ~ 50899 (-) False G356274
TU406141 other downstream 13803 14927 ~ 39842 (-) True G356249
TU406246 other upstream 188547 248563 ~ 256870 (-) False CI01000147_00252331_00335060

Expression Profile