RNA id: TU406204


Basic Information

Item Value
RNA id TU406204
length 494
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G356291
representative True

Chromosome Information

Item Value
chromosome id CI01000147
NCBI id null
chromosome length 707134
location 125090 ~ 125675 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACCTTTATCTCATCAAAGATCTGACACTTGATAGTCAGATACCTGATCTCACTTGTTTTCTGTTATTAAATCAGGGTNNNNNNNNCTTTCCTCCAAAGAGAACTGAGATAACATGTTTTATTTACCTTTTTTCACTCTGTAGTTTGAACTGAGTCATTAGCGATTATAACATTACCTAGCTTGTTTGGTATAGCTTGTTTAATACCGTAGCTTGTGGGATAGTAAGTTACTGATATTTGGCTAATATTGTAGATCTACCGTTGTGTTGGGTTTTGCTCAGTATGATGTAAAGTGGGGGATCAGTGGGCTTGCTGCTGTTGAATATCTAAGTAAGAGACGTCCTTTGTCACAGACGAAGCATAAAATACTATGTGGAGGACGCAAGATAATTTAATAATTGTAGGCCCGGTTTCACAGACAGGGCTTAGCCTAAGCCAGGATTAGACCTTAGTTCAATTAGTATATCTAAGTGGCTTTTATAAACGTTCACAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU406167 lncRNA downstream 15894 82147 ~ 109196 (-) True G356261
TU406194 lncRNA downstream 47372 77492 ~ 77718 (-) True G356281
TU406186 lncRNA downstream 61054 63810 ~ 64036 (-) True G356276
TU406185 lncRNA downstream 65074 53475 ~ 60016 (-) False G356275
TU406183 lncRNA downstream 65074 53645 ~ 60016 (-) True G356275
TU406215 lncRNA upstream 200 125875 ~ 126193 (-) True G356297
TU406219 lncRNA upstream 4726 130401 ~ 130940 (-) True G356301
TU406259 lncRNA upstream 75518 201193 ~ 202348 (-) True G356325
TU406212 lncRNA upstream 87322 212997 ~ 217448 (-) True G356294
TU406244 lncRNA upstream 122841 248516 ~ 249717 (-) False G356316
CI01000147_00231088_00236774.mRNA mRNA upstream 105382 231057 ~ 236774 (-) True CI01000147_00231088_00236774
CI01000147_00252331_00335060.mRNA mRNA upstream 126472 252147 ~ 335060 (-) False CI01000147_00252331_00335060
CI01000147_00426318_00471016.mRNA mRNA upstream 300643 426318 ~ 471016 (-) True CI01000147_00426318_00471016
CI01000147_00482393_00489991.mRNA mRNA upstream 356718 482393 ~ 489991 (-) True CI01000147_00482393_00489991
CI01000147_00491199_00512572.mRNA mRNA upstream 365524 491199 ~ 513215 (-) True CI01000147_00491199_00512572
TU406180 other downstream 74191 48047 ~ 50899 (-) False G356274
TU406141 other downstream 85248 14927 ~ 39842 (-) True G356249
TU406246 other upstream 122888 248563 ~ 256870 (-) False CI01000147_00252331_00335060

Expression Profile