RNA id: TU406215


Basic Information

Item Value
RNA id TU406215
length 319
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G356297
representative True

Chromosome Information

Item Value
chromosome id CI01000147
NCBI id null
chromosome length 707134
location 125875 ~ 126193 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCCCTGAATTGCAGTTACTGTTAGGGAGGACGATACTTAACGTGTCTTTTCTTATACATCCTTCAGCTGAAAGATGGTGAATCTGAAGGTGTGTGTGTTGATTTTCTGTTCTCTGTCAATAAACTGCAGATGTGATCCCCGAAGAGCCTGGTGTTGGTCGTTCATTTGAGGTGCTGGTGAAATTTTGACAACATTCACTTGTGTGTAATTTGATTTGTAATATTAAAGTTCAATGAAATTTATTATCCGAATCACTAGATTCTCTTGTTTAATCCTAAAGTTACTTTCTACACAAAACATTCATTTCAATGTAAAAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU406204 lncRNA downstream 200 125090 ~ 125675 (-) True G356291
TU406167 lncRNA downstream 16679 82147 ~ 109196 (-) True G356261
TU406194 lncRNA downstream 48157 77492 ~ 77718 (-) True G356281
TU406186 lncRNA downstream 61839 63810 ~ 64036 (-) True G356276
TU406185 lncRNA downstream 65859 53475 ~ 60016 (-) False G356275
TU406219 lncRNA upstream 4208 130401 ~ 130940 (-) True G356301
TU406259 lncRNA upstream 75000 201193 ~ 202348 (-) True G356325
TU406212 lncRNA upstream 86804 212997 ~ 217448 (-) True G356294
TU406244 lncRNA upstream 122323 248516 ~ 249717 (-) False G356316
TU406241 lncRNA upstream 122370 248563 ~ 249717 (-) False G356316
CI01000147_00231088_00236774.mRNA mRNA upstream 104864 231057 ~ 236774 (-) True CI01000147_00231088_00236774
CI01000147_00252331_00335060.mRNA mRNA upstream 125954 252147 ~ 335060 (-) False CI01000147_00252331_00335060
CI01000147_00426318_00471016.mRNA mRNA upstream 300125 426318 ~ 471016 (-) True CI01000147_00426318_00471016
CI01000147_00482393_00489991.mRNA mRNA upstream 356200 482393 ~ 489991 (-) True CI01000147_00482393_00489991
CI01000147_00491199_00512572.mRNA mRNA upstream 365006 491199 ~ 513215 (-) True CI01000147_00491199_00512572
TU406180 other downstream 74976 48047 ~ 50899 (-) False G356274
TU406141 other downstream 86033 14927 ~ 39842 (-) True G356249
TU406246 other upstream 122370 248563 ~ 256870 (-) False CI01000147_00252331_00335060

Expression Profile