RNA id: TU406259


Basic Information

Item Value
RNA id TU406259
length 358
lncRNA type intronic
GC content 0.46
exon number 2
gene id G356325
representative True

Chromosome Information

Item Value
chromosome id CI01000147
NCBI id null
chromosome length 707134
location 201193 ~ 202348 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTTACCTGGGCTAAGGAGAAAAAGAACTGGACTGTTGCTCAGTGGTCCAAAGTCCTCTTTAAGTAAATTTTGCATTTCATTTGGAAATCAAGGTCCCAGAGTCTGGAGGAAGAGTGGAGAGGCACAGAAACCATGTTGCTTGAAGTCCAGTGTGAAGTTTCCACAGTCAGTGATGATTTGGGCTGCCATGTCATCTGCTGGTGTTGGTCCACTGTGTTTTCTGAAGTCCACAGTCAACGCAGCCATATACCAGGAAATTTTAGAGCACTTCATGCTTCCTTCTGCTGACAAGCTTTATGGAGATGCTGATTTCATTTTCCAGCAGGATTTGGCACCTGCCCACACTGCCAAAGGTAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU406219 lncRNA downstream 70253 130401 ~ 130940 (-) True G356301
TU406215 lncRNA downstream 75000 125875 ~ 126193 (-) True G356297
TU406204 lncRNA downstream 75518 125090 ~ 125675 (-) True G356291
TU406167 lncRNA downstream 91997 82147 ~ 109196 (-) True G356261
TU406194 lncRNA downstream 123475 77492 ~ 77718 (-) True G356281
TU406212 lncRNA upstream 10649 212997 ~ 217448 (-) True G356294
TU406244 lncRNA upstream 46168 248516 ~ 249717 (-) False G356316
TU406241 lncRNA upstream 46215 248563 ~ 249717 (-) False G356316
TU406242 lncRNA upstream 46215 248563 ~ 249717 (-) False G356316
TU406245 lncRNA upstream 46215 248563 ~ 249717 (-) True G356316
CI01000147_00231088_00236774.mRNA mRNA upstream 28709 231057 ~ 236774 (-) True CI01000147_00231088_00236774
CI01000147_00252331_00335060.mRNA mRNA upstream 49799 252147 ~ 335060 (-) False CI01000147_00252331_00335060
CI01000147_00426318_00471016.mRNA mRNA upstream 223970 426318 ~ 471016 (-) True CI01000147_00426318_00471016
CI01000147_00482393_00489991.mRNA mRNA upstream 280045 482393 ~ 489991 (-) True CI01000147_00482393_00489991
CI01000147_00491199_00512572.mRNA mRNA upstream 288851 491199 ~ 513215 (-) True CI01000147_00491199_00512572
TU406180 other downstream 150294 48047 ~ 50899 (-) False G356274
TU406141 other downstream 161351 14927 ~ 39842 (-) True G356249
TU406246 other upstream 46215 248563 ~ 256870 (-) False CI01000147_00252331_00335060

Expression Profile