RNA id: TU406212


Basic Information

Item Value
RNA id TU406212
length 946
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G356294
representative True

Chromosome Information

Item Value
chromosome id CI01000147
NCBI id null
chromosome length 707134
location 212997 ~ 217448 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACTGACCAAGAAAACAATAGTTTTGCCTGTAGTGTTTTGCCTTAATTTGACATTTTTAGGATTTAATTATTCGCTTTTTATCAACTCACATTACCTTGATTTTTAGTTGTATATAGAAAGTGTCACCATTTAGATATGCTAATATGTGCTGTATGTGTGTGTTTTATATGCATATAAGTGTGTGCATGTGTGGGTGTATATCTGTGCTTGATGTCGAGTGTGTGCAAGCGTGCACGTGTTCGTCTATGCATGATTATTCATGTGGAGTGTTTGTGGATGTCTACAAACAGGTGCTCATTGGTGCATATTGAAACACGTGTGTGTGTGAGCAGATCCTCAGAGCTGCACTTGACTGCAGAGTATCGTCCTTGATGATCTCGACAGAAGCAGGTTGCCATAGAAACAGGTGTGACTGTCTCCACTGCAGCAGAGTTGCACATCAGCTGAGTCTGTGTGAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTCACTGGTATGTGGTGGGGCTGACGTTGATGCAGCGCGGGTGACTGCCCGATTCAAACTTGCTGGCCAGCGTGACGTTGTTTCCAAACAGACAGTAGCGCGGCATCTTCACACCGACGACACCAGCCAGCACTGAGCCTGAGTGGATGCCGATCCTCAGCTACAGAGACGGAGAGAGAGGGTAAAATCAAGGCGTCAGCACTTCTTCGGACAGCTCTATCATCTTCAGGGCCATGAGCGCGATTGGCTTAGCATGGCTGTCAATCTTCCTGTGGAGCCCGCCCGCCACGCAGTATGCATCACCTATAGTTTCAATCTGTGGAGAGAAGAGGTGAGATTTACTGTCCACACATACGAACAGATCCTTTGCCAGAATGCCCTATTAACACCTTACACTCTAAAAAAATGCTGGGTTAAAAACAACCCAAGTTGGGTTGAAAATAGACAAACCCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU406259 lncRNA downstream 10649 201193 ~ 202348 (-) True G356325
TU406219 lncRNA downstream 82057 130401 ~ 130940 (-) True G356301
TU406215 lncRNA downstream 86804 125875 ~ 126193 (-) True G356297
TU406204 lncRNA downstream 87322 125090 ~ 125675 (-) True G356291
TU406167 lncRNA downstream 103801 82147 ~ 109196 (-) True G356261
TU406244 lncRNA upstream 31068 248516 ~ 249717 (-) False G356316
TU406241 lncRNA upstream 31115 248563 ~ 249717 (-) False G356316
TU406242 lncRNA upstream 31115 248563 ~ 249717 (-) False G356316
TU406245 lncRNA upstream 31115 248563 ~ 249717 (-) True G356316
TU406274 lncRNA upstream 46067 263515 ~ 284349 (-) True G356337
CI01000147_00231088_00236774.mRNA mRNA upstream 13609 231057 ~ 236774 (-) True CI01000147_00231088_00236774
CI01000147_00252331_00335060.mRNA mRNA upstream 34699 252147 ~ 335060 (-) False CI01000147_00252331_00335060
CI01000147_00426318_00471016.mRNA mRNA upstream 208870 426318 ~ 471016 (-) True CI01000147_00426318_00471016
CI01000147_00482393_00489991.mRNA mRNA upstream 264945 482393 ~ 489991 (-) True CI01000147_00482393_00489991
CI01000147_00491199_00512572.mRNA mRNA upstream 273751 491199 ~ 513215 (-) True CI01000147_00491199_00512572
TU406180 other downstream 162098 48047 ~ 50899 (-) False G356274
TU406141 other downstream 173155 14927 ~ 39842 (-) True G356249
TU406246 other upstream 31115 248563 ~ 256870 (-) False CI01000147_00252331_00335060

Expression Profile