RNA id: TU406313


Basic Information

Item Value
RNA id TU406313
length 627
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G356368
representative True

Chromosome Information

Item Value
chromosome id CI01000147
NCBI id null
chromosome length 707134
location 419752 ~ 420378 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTGAGCAAAATGCTACAAAATGATGAATATAGACTGCATCAGGTGTGTTTTGGCAGGTTTTTATTTAATTGATAAAGGTGAATAGTTATGTATTGCACAATAGTATGATATTTTGTACATGCAACTTAGCTAGTTTACTGTAAATAATAATGTCATTTAACTCAGTTTACCGCCATGTTTTCTCACGCCACGGCCCATCTCGGAATTTAGGACGCAAAGAAAAATTCGTTTCTCACTCATAATTACGGATGTGTGGTGGCGCTCGCAATCGTTCTGCTCCGTGATAACGAACGCAAGTTAAAGGTAGGGTAAGCAATTTTTTTGTTATACTAGTTGAAGCTCTCTTCACATCCTGATAGCTATAAATATTAGAAGTGGTCTAAATCTTTTGTGGAAGTCTCAGGACCAAAAAATTATTTGACTGAAGGACTAAATGCAATGATATGATGTCCTACCTGCCTGTCAACATATGCATTTCCATACCTCTGCCAGTGTTGCCAAGTCCTCGGTTTTCCCGTGGAATTGGGCTACTTTAACACTGTTGCCGCGGTTGTTGTTTTCCATGTCCACGGGTTGAAGCGACCCCAAATAACATGATATTTACCCCTTGGAATGCAAATTTTACC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU406304 lncRNA downstream 213 417635 ~ 419539 (-) True G356364
TU406307 lncRNA downstream 7812 399775 ~ 411940 (-) True G356365
TU406287 lncRNA downstream 75688 343220 ~ 344064 (-) True G356348
TU406274 lncRNA downstream 135403 263515 ~ 284349 (-) True G356337
TU406242 lncRNA downstream 162882 248563 ~ 249717 (-) False G356316
TU406335 lncRNA upstream 162563 582941 ~ 584099 (-) True G356384
TU406344 lncRNA upstream 195842 661363 ~ 661564 (-) True G356390
TU406329 lncRNA upstream 232309 652687 ~ 656083 (-) False G356382
TU406330 lncRNA upstream 232309 652687 ~ 656083 (-) True G356382
TU406382 lncRNA upstream 249445 669823 ~ 670087 (-) True G356423
CI01000147_00252331_00335060.mRNA mRNA downstream 84692 252147 ~ 335060 (-) False CI01000147_00252331_00335060
CI01000147_00231088_00236774.mRNA mRNA downstream 182978 231057 ~ 236774 (-) True CI01000147_00231088_00236774
CI01000147_00426318_00471016.mRNA mRNA upstream 5940 426318 ~ 471016 (-) True CI01000147_00426318_00471016
CI01000147_00482393_00489991.mRNA mRNA upstream 62015 482393 ~ 489991 (-) True CI01000147_00482393_00489991
CI01000147_00491199_00512572.mRNA mRNA upstream 70821 491199 ~ 513215 (-) True CI01000147_00491199_00512572
CI01000147_00546348_00552951.mRNA mRNA upstream 123789 544167 ~ 552951 (-) True CI01000147_00546348_00552951
CI01000147_00586020_00603643.mRNA mRNA upstream 165470 585848 ~ 606212 (-) True CI01000147_00586020_00603643
TU406246 other downstream 162882 248563 ~ 256870 (-) False CI01000147_00252331_00335060
TU406180 other downstream 368853 48047 ~ 50899 (-) False G356274
TU406141 other downstream 379910 14927 ~ 39842 (-) True G356249

Expression Profile