RNA id: TCONS_00001481


Basic Information

Item Value
RNA id TCONS_00001481
length 2736
RNA type mRNA
GC content 0.54
exon number 10
gene id XLOC_000925
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 673163 ~ 681116 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTTGGCTGGGTTTGCCCTGTGCGTAAACGCGGCGCAGAGCGCGTGGGAGGAGAGCTTCGTGCTGCCGGTGCGTCTGGACACACAACCGGGACACACGAAGCAATCCCGGGAGGAGGACTCTGAGAAACGCATCTATCGCTTGGATGTCTTTGGAAAGCGGATGGTGTTGGCGTTGGAACCGGACCAGACCTTTCTGGCGCCTGGGTTTGTGTTCCAGATGGTGGGGAAACCGGAGACCGGTGAGTTTGACAGCGCTGGAGAGGCGCGATGCTTCTTCTCGGGAACCGTAAACGGAGATGAACTTTCCTCCGCGGCGATTAATCTGTGCAAAGGACTGCACGGAGGCTTCTCTGTCGGCGGGGAAGAGTACTTCATCCAGCCTGAGAACTCCACCGGAGCAGCTACAGACCGAGACACCCACACCATTCGCCGCAGGACACCGGGGATCCTGGCCGAGGAGAGCGGCTCCAAGTGCGGCGTGAATGAGGAGGAGGAGCGGGTCACCGAGAAACCCCACACAACCCATTCCAAACCATCCGAGTCTAAAGCACACCACCGATCTCGGCGCTTTGTGTCCACGCCTCGATATCTGGAGATCATGATTGTGGCAGACCAGTCAATGGCGGAGTTTCATGGCGCTCAACTCAAACCTTATCTGCTGACCATCATGGCGGTGGCCTCTCGCCTGTATCGACATCCTACCATCCATAATTCCATTACTCTGGCAGTCGTGAAGCTACTTGTTGTGCATGATGAAGAACACGGCCCTCATGTGTCCACCAATGCAGCGCTGACCCTCAGGAGCTTCTGCCAATGGCAAAAACAGCACAACCAACCCAGCGACCGTCACCCAGAACACTACGACACCGCAGTACTGTTCACTAGAAAGGATCTTTGTGGAGCTCACTCCTGTGACACCCTGGGGATGGCAGATGTTGGCACCGCGTGCGATCCAGACCGAAGCTGCTCCATTATTGAAGACGACGGTCTTCAGGCTGCCTTCACAGTTGCACATGAGCTTGGTCACGTGTTTAACATGCCCCATGATGATGCCAAGCAATGTGCCAGTGTTAACGGGGACCAATGGGGTGCCCACATGATGGCTTCAACATTGTCAAATCTAAACCAGTTAGACCCCTGGTCCCCTTGCAGTGCTCTTATGGTCACATCATTCTTGGACAATGGCCATGGTCAGTGTTTACTGGACAAGCCCCAAAAGCCTGAGGAGTTGCCCCAAACTCTGCCAGGATCGGTTTACGATGCTGATAGACAATGCCGTCTTACATTCGGAGAGGAGTCCCAGCACTGTCCTGACCTGAGCTCCACCTGTGCCGCCCTTTGGTGCACTGTCACCTCTGCAAATGGCTTGTTGGTTTGCCAAACCAAGAACTTTCCTTGGGCTGATGGGACGCCTTGTGGGTCTAACAGCTACTGTATGGCAGGCCAGTGTTTGAGCAAGACTGAGGCTGCCAAATATGAGACTCCCGTCAATGGTGGATGGGGATCGTGGGGATCTTGGGGAGACTGCTCACGTACCTGTGGAGGAGGCGTGCAATACTCTTTTAGGGACTGTGTCAATCCCCGACCCAAAAATGGAGGCAAATACTGCGAGGGCAAGAGAATTCAGTACCGCTCCTGCAACACAGAGACCTGCCCTGATAGCAATGGTTTGACCTTCCGTGAGGAGCAGTGTTTGGCACACAATGACCTCTCCTCTCAGGTGTCACTGGGCTCGGGTGAGGGTGTTGAGTGGGTGCCGAAGTACGCCGGAGTCTCTCCTAAGGATCGCTGCAAGTTGGTGTGCCGAGCGAAGGGAACGGGCTACTTCTTCATTCTGAAACCAAAGGTGGCTGATGGGACACCGTGCACTCCAGATTCCACTTCAGTCTGTGTCCAAGGACAGTGTGTGAAGGCTGGATGCGACAGGGTCATCGGATCCGACAAACGATTCGACAAATGTGGCATCTGTGGAGGAGATGGATCAACTTGCAAGAAAGTTTCCGGATCAATGGAACGTGCTAGACCGGGCTACCAAGATGTGGTGACGATTCCAGCTGGTGCCACACACCTAGATGTCAAGCAGCGATCTTTTGGAGGCCGTAGCCAAGACAACAGCTACCTAGCAGTCCGCCGGCAAGATGGCTCCTACCTTCTGAACGGCGACTATAAGTTGACCACTTTAGAGACTGATATCTCTGTGAAAGGTGCTCTGCTGCGGTACAGCGGCTCCTCTGTTCTTCTGGAGCGCCTGAGAAGCTTTGCTCCCTTACCTGAGCCTTTGACCATCCAGGTGTTGTCAGTCGGTGAATCCCCTAGGCCTCGTGTCAAGTATAGCTACTTTGCTCCACGTCCCAATGGCTCAAACCGGCCGTCTATCAACGCAATTAGTAAAGCTGTAGATGCTGAATGGTTCCTGGGTGAGTGGGGAACTTGTTCGAAAACCTGCGGCGGAGGGATTCAGACGCGGGATGTTATGTGCCTTGATTCTAAACGTCGTCCATCTAAAAACTGTGTTGATGAGTTGCGCCCTGCATCATCTCGGCAATGTGCTTTGCAGGATTGCCCATTCTGGTTCTTGGGTGAGTGGGGAACTTGCTCGAAAACCTGCGGCGGCTTTCGCAAGCGTACACTTAGCTGCATTACACATGATGGTCACATTTTGCCTAATAGCAGCTGCAATGCAACGGATCGACCACGACCTCTTCTGAACTTGTGCAATCTGACTCCCTGTTGA

Function

GO:

id name namespace
GO:0030198 extracellular matrix organization biological_process
GO:0006508 proteolysis biological_process
GO:0031012 extracellular matrix cellular_component
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-070814-1 Predicted to enable metalloendopeptidase activity. Predicted to be involved in extracellular matrix organization. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Is expressed in oocyte stage III; ovarian follicle stage I; ovarian follicle stage II; ovarian follicle stage III; and ovarian follicle stage IV. Orthologous to human ADAMTS1 (ADAM metallopeptidase with thrombospondin type 1 motif 1).

Ensembl:

ensembl_id ENSDART00000165894

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001475 lncRNA downstream 50984 620990 ~ 622179 (-) False XLOC_000923
TCONS_00001467 lncRNA downstream 159446 511771 ~ 513717 (-) True XLOC_000919
TCONS_00001463 lncRNA downstream 188575 479807 ~ 484588 (-) False XLOC_000918
TCONS_00001454 lncRNA downstream 327268 343617 ~ 345895 (-) False XLOC_000914
TCONS_00002896 lncRNA downstream 462350 209129 ~ 210813 (-) True XLOC_000912
TCONS_00003289 lncRNA upstream 97459 778575 ~ 779614 (-) True XLOC_000927
TCONS_00003290 lncRNA upstream 324821 1005937 ~ 1014866 (-) True XLOC_000929
TCONS_00002897 lncRNA upstream 462846 1143962 ~ 1253194 (-) True XLOC_000931
TCONS_00003292 lncRNA upstream 610059 1291175 ~ 1314969 (-) False XLOC_000932
TCONS_00003291 lncRNA upstream 610059 1291175 ~ 1314969 (-) False XLOC_000932
TCONS_00001480 mRNA downstream 3446 658405 ~ 669717 (-) True XLOC_000924
TCONS_00001478 mRNA downstream 16470 621374 ~ 656693 (-) False XLOC_000923
TCONS_00001477 mRNA downstream 16470 621374 ~ 656693 (-) False XLOC_000923
TCONS_00001479 mRNA downstream 39807 626550 ~ 633356 (-) True XLOC_000923
TCONS_00001474 mRNA downstream 47288 617620 ~ 625875 (-) False XLOC_000923
TCONS_00001482 mRNA upstream 10622 691738 ~ 714626 (-) True XLOC_000926
TCONS_00001483 mRNA upstream 279093 960209 ~ 999556 (-) False XLOC_000928
TCONS_00001484 mRNA upstream 292351 973467 ~ 999556 (-) True XLOC_000928
TCONS_00001489 mRNA upstream 681816 1362932 ~ 1402303 (-) True XLOC_000934
TCONS_00001490 mRNA upstream 937878 1618994 ~ 1627487 (-) False XLOC_000937
TCONS_00001476 other downstream 48083 621025 ~ 625080 (-) False XLOC_000923
TCONS_00001460 other downstream 201238 467743 ~ 471925 (-) True XLOC_000917
TCONS_00001442 other downstream 519317 153238 ~ 153846 (-) False XLOC_000909
TCONS_00001429 other downstream 623328 47954 ~ 49835 (-) False XLOC_000904
TCONS_00001421 other downstream 628617 42204 ~ 44546 (-) False XLOC_000903
TCONS_00001485 other upstream 369825 1050941 ~ 1051057 (-) True XLOC_000930
TCONS_00001486 other upstream 632489 1313605 ~ 1315753 (-) True XLOC_000932
TCONS_00001492 other upstream 1189745 1870861 ~ 1875118 (-) False XLOC_000939
TCONS_00001493 other upstream 1192892 1874008 ~ 1885600 (-) False XLOC_000939
TCONS_00001497 other upstream 1203244 1884360 ~ 1928111 (-) False XLOC_000939

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000299_05466693_05471714.mRNA True 4099 mRNA 0.50 8 CI01000299 5465642 ~ 5471987 (-)