RNA id: TU409927


Basic Information

Item Value
RNA id TU409927
length 2127
RNA type TUCP
GC content 0.42
exon number 2
gene id CI01000152_01892421_01893463
representative True

Chromosome Information

Item Value
chromosome id CI01000152
NCBI id null
chromosome length 3381324
location 1890149 ~ 1893866 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTCACTGTTCCGCCCGGGTTTCCTTTATGATCGCGGGATCTCCCGTATCTTACAGCAGACTTCACCTGACCGCTGGTGTAGCCGTGCACTCAGCCGCGCGCTCTCTCTCTCGCTCACTCGCTCTCCCCAGAACGACTCACTCTGCACCGAGCACTCCAGTCCCATTGGAAGTTGGCGGTGCGAGGAGTCTGACATTTACGCGCAGGGATATCTACGTAAAAATAAGTGCACTTGTTTTGCGGGGATAGTTGCCATATCCACCGTAGCTGCCTATACAGTTCTATAGCGCCTTCTGCGTCGCGAGCCCGTCCTTAACAGCAGTCATGTCCGAGGTTCTGCCGTACGGAGAGGGGAAAATGAGCGGATACGGAGGGGACAACGATGTCAGTCAGATGTCCTTCAGCTGCGGGCTGCAGGACACCAACTCGTTCTTCGGAGCGTCGCAAGCGAAAAGACCTCCAAAACTTGGACAGATCGGCAGGGCGAAGAGAGTGGTCATCGAGGACGACCGAATAGATGAGGTGCTGAAAGGCATGACCGACAAATCATCACCGGGCGTTTAAACCCGCGCGATGCCTTGCAGACATTTCAATTTTTTATCACCGATTCGAAGCACTTGTCGGTTGTGCATGTGAAGAAGATTGCAAAGAGATGGGGGGACGGTGGCACGACGCTCGAACCACGAGGAGACTAAACAAAAAGGGCAAACGAGAATTAAAGAAGGGAGAGACGGAATTTCCTTTGGGGTTTGCTGGCAATTCTCCAATATAAACGACACCCGAATGAAAGCTTTCAGGAAGATGTCGGAGATGTTGTTGTGGCTGCGCGCGCTGCGGCTCTGTGAATAAAGATGGATGGACTTGTCATTATTATTCCACGACCATCATCTTCCAAAAGCGCTGTAAGCAACGCGAAGTTCAACCGAAGACTGAACCGCATCTTAAGCTCTGTTACTATAGCTGTACAGTATCTTTGCTCAAAGACCTTCCCCTTCACTCACACACACACAAACAAACACATACATATATGGATCTGCCTTGAGCGTCGACTTCAATTCGACTGCTGCTTTTAGAGACATTTTAGACTTCACACATACAGATATTGAGCTCCCATAATGATAATTGAACTATATATGTACGGATGGTGCAATGTGAATATTTTCTTTCGCCATTTTGCATCATGTTCTTTTTCAAAAATTGAGAATATTATCATTCACATGCCCACAGGTGTTGAAGCGTATAGTCTTTGAAGCGTCGTTTGCTGATCTATTGTTTTGCCCTTCACTGCAGCTGATTTGCGCACCTGCGCCACGGATTCACAACAGTACAGCACAGAGGAACATTGTGCATTACCACCTCATGTAATTAAACCAACATGAATGCGTCTTGGTTTCTTCCAAGCCCTTTTATGTTTGATATATTTTGATTTCAGCTCCTCACATTTCTTTTGTCGTGTCCATCTCTTTGCATGAACTTTCACTCCGGTGCCAACAGAGGTGCCACCATTAATCTTACCCTGGCACGCTTCTTCTTTTTAAAAAAAAGTCATATTTGTATTTTTATATCTAAATATTTGTTATTTAAAATGATATGCTAGTATGTCGTCTTAAAGATTCATCAACAATGATGTTTATATTTCAGAGAAAAATCTTTAGACAGGGACGAGAGGATAATTCAGTTTGGTTGGGATGGTTTTTTGTTTGTTTTTAAAAAGACTTGATGAATGAATGTTTCTCTGGTTTTTTGCACACCTACACATCTGTGTTGAACTACTGTTATATGGAAATCGTAAACTGTGACTTGAGCTTTGTTGAATTTGTTAGAAAAATGGCGATATTAGAAATCTACTGCACTGTTTACGAATATCTTCAAAAAACTTGTTATTTGACAGGTTTTTGGACATTACGTTTCTTTTATTTGAATTTTTTGCTTTGTTTTGTACCATTATTCTAAAGAAACTGACTATGGTTTGTTGTGCATGAAACCTTAATACTTTTCAATAATGGAACATCGTTTTATTAAGCAAAAAAAGCAACAAAAAATGTCATGACATTCTAAGAATGAATCATTGCATATTAAAATACCATTTTCACTGTATTTGGTGAACTAATAAATGGTGGAAGAACA

Function

GO:

id name namespace
GO:0019901 protein kinase binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409874 lncRNA downstream 6916 1883554 ~ 1883942 (-) True G359318
TU409871 lncRNA downstream 7478 1882977 ~ 1883380 (-) True G359315
TU409833 lncRNA downstream 201287 1689031 ~ 1689571 (-) True G359289
TU409823 lncRNA downstream 218619 1671574 ~ 1672239 (-) False G359281
TU409821 lncRNA downstream 218619 1671750 ~ 1672239 (-) True G359281
TU409994 lncRNA upstream 59553 1953012 ~ 1954853 (-) True G359429
TU409934 lncRNA upstream 152923 2046382 ~ 2059154 (-) False G359372
TU409933 lncRNA upstream 162372 2055831 ~ 2059154 (-) True G359372
TU409944 lncRNA upstream 173104 2066563 ~ 2068267 (-) True CI01000152_02066678_02068178
TU409946 lncRNA upstream 193872 2099147 ~ 2111682 (-) True G359381
CI01000152_01770267_01784486.mRNA mRNA downstream 106372 1770091 ~ 1784486 (-) True CI01000152_01770267_01784486
CI01000152_01763662_01769747.mRNA mRNA downstream 121111 1763289 ~ 1769747 (-) True CI01000152_01763662_01769747
CI01000152_01755247_01760266.mRNA mRNA downstream 130183 1755130 ~ 1760675 (-) True CI01000152_01755247_01760266
CI01000152_01584481_01585153.mRNA mRNA downstream 305590 1583831 ~ 1585268 (-) True CI01000152_01584481_01585153
CI01000152_01567745_01570475.mRNA mRNA downstream 320383 1567708 ~ 1570475 (-) False CI01000152_01567745_01570475
CI01000152_01905400_01907934.mRNA mRNA upstream 10244 1903703 ~ 1907934 (-) True CI01000152_01905400_01907934
CI01000152_01917798_01946700.mRNA mRNA upstream 23244 1916703 ~ 1948064 (-) True CI01000152_01917798_01946700
CI01000152_01999033_01999195.mRNA mRNA upstream 105324 1998783 ~ 1999195 (-) True CI01000152_01999033_01999195
CI01000152_02006897_02010593.mRNA mRNA upstream 112893 2006352 ~ 2010593 (-) True CI01000152_02006897_02010593
CI01000152_02015257_02024292.mRNA mRNA upstream 121798 2015257 ~ 2024292 (-) False CI01000152_02015257_02024292
TU409694 other downstream 546853 1337660 ~ 1344005 (-) True G359178
TU409220 other downstream 1325574 509697 ~ 565284 (-) False G358758
TU409936 other upstream 128080 2024633 ~ 2024838 (-) True G359374
TU410397 other upstream 424809 2318268 ~ 2318734 (-) True G359788
TU410417 other upstream 475533 2368992 ~ 2459836 (-) True G359800

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00032919 True 2125 mRNA 0.41 2 NC_007113.7 44943396 ~ 44946094 (-)
bowfin (Amia calva) AMCG00009563 False 2089 mRNA 0.40 2 CM030126.1 41596308 ~ 41599124 (+)