RNA id: CI01000152_01999033_01999195.mRNA


Basic Information

Item Value
RNA id CI01000152_01999033_01999195.mRNA
length 413
RNA type mRNA
GC content 0.39
exon number 1
gene id CI01000152_01999033_01999195
representative True

Chromosome Information

Item Value
chromosome id CI01000152
NCBI id null
chromosome length 3381324
location 1998783 ~ 1999195 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTGGAGCACAGGTGTGAGGTCCTGGCTGTCTGTAGTAGGCCTAATCTGCCTGTGGAAAGCTCTGAAGAGCATGTCAATATGTCTCTCTCTTTCCAGACCAAAGGGAAGAGGCTGAGCGGTCACAGATGGGAAGGCCTGATCGAGAGAGAACGCAGGAGGTAGAAACGTTGCATTTAAAATTCATAGCAAATATCTGTCAAATGTCATTGTGAGAATTTCCATTTGCAACCCATTGTATTTTTATAATTCGATGCATTTCAGAGTGAAACAGGGCATTAAATGAGAAAAATAGGTGATCAGAATGTCGCCAGACAAAGATGAGTTTACTAAAACAATGCATAAATAACTATATATTTATTAAAATATATCTTTCTCTTTTCTGCAATTCACCTCTCTCCAGCTTTCTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409994 lncRNA downstream 43930 1953012 ~ 1954853 (-) True G359429
TU409926 lncRNA downstream 105324 1890149 ~ 1893459 (-) False CI01000152_01892421_01893463
TU409874 lncRNA downstream 114841 1883554 ~ 1883942 (-) True G359318
TU409871 lncRNA downstream 115403 1882977 ~ 1883380 (-) True G359315
TU409833 lncRNA downstream 309212 1689031 ~ 1689571 (-) True G359289
TU409934 lncRNA upstream 47187 2046382 ~ 2059154 (-) False G359372
TU409933 lncRNA upstream 56636 2055831 ~ 2059154 (-) True G359372
TU409944 lncRNA upstream 67368 2066563 ~ 2068267 (-) True CI01000152_02066678_02068178
TU409946 lncRNA upstream 88136 2099147 ~ 2111682 (-) True G359381
TU410299 lncRNA upstream 161157 2160352 ~ 2175594 (-) True G359709
CI01000152_01917798_01946700.mRNA mRNA downstream 50719 1916703 ~ 1948064 (-) True CI01000152_01917798_01946700
CI01000152_01905400_01907934.mRNA mRNA downstream 90849 1903703 ~ 1907934 (-) True CI01000152_01905400_01907934
CI01000152_01892421_01893463.mRNA mRNA downstream 104917 1892135 ~ 1893866 (-) False CI01000152_01892421_01893463
CI01000152_01770267_01784486.mRNA mRNA downstream 214297 1770091 ~ 1784486 (-) True CI01000152_01770267_01784486
CI01000152_01763662_01769747.mRNA mRNA downstream 229036 1763289 ~ 1769747 (-) True CI01000152_01763662_01769747
CI01000152_02006897_02010593.mRNA mRNA upstream 7157 2006352 ~ 2010593 (-) True CI01000152_02006897_02010593
CI01000152_02015257_02024292.mRNA mRNA upstream 16062 2015257 ~ 2024292 (-) False CI01000152_02015257_02024292
CI01000152_02066678_02068178.mRNA mRNA upstream 67235 2066430 ~ 2068284 (-) False CI01000152_02066678_02068178
CI01000152_02086974_02089993.mRNA mRNA upstream 87293 2086488 ~ 2090050 (-) False CI01000152_02086974_02089993
CI01000152_02190690_02206511.mRNA mRNA upstream 191487 2190682 ~ 2206658 (-) True CI01000152_02190690_02206511
TU409927 other downstream 105324 1890858 ~ 1893459 (-) True CI01000152_01892421_01893463
TU409694 other downstream 654778 1337660 ~ 1344005 (-) True G359178
TU409220 other downstream 1433499 509697 ~ 565284 (-) False G358758
TU409936 other upstream 22344 2024633 ~ 2024838 (-) True G359374
TU410397 other upstream 319073 2318268 ~ 2318734 (-) True G359788
TU410417 other upstream 369797 2368992 ~ 2459836 (-) True G359800

Expression Profile