RNA id: TU409944


Basic Information

Item Value
RNA id TU409944
length 486
lncRNA type sense_over
GC content 0.40
exon number 4
gene id CI01000152_02066678_02068178
representative True

Chromosome Information

Item Value
chromosome id CI01000152
NCBI id null
chromosome length 3381324
location 2066430 ~ 2068284 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGCTACTCTCCGCACAACTAACTTATCAAATACTTTTGATCAATTTCATTTTTCTTTTTCACCTATAAGTGGCTCTTTTCCCTCTCAAGATGAACAGACTCGTCCTGACGTCATCGACGCTGCTGCTGTTGCTGTGTGTCTGGGTCACTTTGAGTCAAAGCGGTCCGGTGAGGTGCTGTACCAAGTATTCATCGCAGCCTTTTCCTGTTCACCGGCTGAAAGACTTCACACTGCAGGACTCCACCATGACCTGCAACATAGAGGCTGTCATTTTTACTACGATAAAGGACAGAATGATATGTGCTAACCCTGATGATCTATGGGTTCAGAATGCCATCACACATATCCAGGAAAGGAAAAAGTCAGCATAATGTGGACATCGTCAACTTGGTCTAAAACTGTCTTAAGCTGAACAAACCAACAGTAATATAAAGCACATGGATTAGAATTTATTTTTGTAATTAATAAATTAATATTTTGTTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409934 lncRNA downstream 7409 2046382 ~ 2059154 (-) False G359372
TU409933 lncRNA downstream 7409 2055831 ~ 2059154 (-) True G359372
TU409994 lncRNA downstream 111710 1953012 ~ 1954853 (-) True G359429
TU409926 lncRNA downstream 173104 1890149 ~ 1893459 (-) False CI01000152_01892421_01893463
TU409874 lncRNA downstream 182621 1883554 ~ 1883942 (-) True G359318
TU409946 lncRNA upstream 19064 2099147 ~ 2111682 (-) True G359381
TU410299 lncRNA upstream 92085 2160352 ~ 2175594 (-) True G359709
TU410288 lncRNA upstream 153661 2221928 ~ 2226863 (-) True G359701
TU410331 lncRNA upstream 182213 2250480 ~ 2252239 (-) True G359737
TU410343 lncRNA upstream 207576 2275843 ~ 2316256 (-) True G359745
CI01000152_02015257_02024292.mRNA mRNA downstream 42271 2015257 ~ 2024292 (-) False CI01000152_02015257_02024292
CI01000152_02006897_02010593.mRNA mRNA downstream 55970 2006352 ~ 2010593 (-) True CI01000152_02006897_02010593
CI01000152_01999033_01999195.mRNA mRNA downstream 67368 1998783 ~ 1999195 (-) True CI01000152_01999033_01999195
CI01000152_01917798_01946700.mRNA mRNA downstream 118499 1916703 ~ 1948064 (-) True CI01000152_01917798_01946700
CI01000152_01905400_01907934.mRNA mRNA downstream 158629 1903703 ~ 1907934 (-) True CI01000152_01905400_01907934
CI01000152_02086974_02089993.mRNA mRNA upstream 18221 2086488 ~ 2090050 (-) False CI01000152_02086974_02089993
CI01000152_02190690_02206511.mRNA mRNA upstream 122415 2190682 ~ 2206658 (-) True CI01000152_02190690_02206511
CI01000152_02334753_02345817.mRNA mRNA upstream 265901 2334168 ~ 2345817 (-) True CI01000152_02334753_02345817
CI01000152_02427978_02434593.mRNA mRNA upstream 359252 2427519 ~ 2434593 (-) True CI01000152_02427978_02434593
CI01000152_02440117_02451100.mRNA mRNA upstream 371850 2440117 ~ 2451822 (-) True CI01000152_02440117_02451100
TU409936 other downstream 41725 2024633 ~ 2024838 (-) True G359374
TU409927 other downstream 173104 1890858 ~ 1893459 (-) True CI01000152_01892421_01893463
TU409694 other downstream 722558 1337660 ~ 1344005 (-) True G359178
TU409220 other downstream 1501279 509697 ~ 565284 (-) False G358758
TU410397 other upstream 250001 2318268 ~ 2318734 (-) True G359788
TU410417 other upstream 300725 2368992 ~ 2459836 (-) True G359800

Expression Profile