RNA id: TU409631


Basic Information

Item Value
RNA id TU409631
length 715
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id G359126
representative True

Chromosome Information

Item Value
chromosome id CI01000152
NCBI id null
chromosome length 3381324
location 1184246 ~ 1185333 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATAGTAATAAGAAAACAACACAAAACCTATGTAAATGCTCAGATATTGCTGTAGTTACCTGAGTACAGTCAGGCTGGGACAGGCCTGAATGAGGGACAGGATTTCAGGGGCCAATGTGCCAGTCTGATGTGAATCCTGCAGACAGACTTTCTTCAAACCAGACAGTGATTTCAGGAATGTAAATAGTCCCTTTCCCCCAAAACCCCTATGATAACTGTACAGCTGTGTCTCTTTGTGTGAATTCACCCAGTTGATGGTGGAAACCACTGAGCTCGGACAGGTTAAAGTTAATGATGTGATTGCTGATCTGCTAAAAGACAACCTGAAGCATTCACAGATATAAACATCAGTATAGGTTTATAATAAGCATCAGGTTTTAGGATGAGACTGCAATTTTGTAAGTGACAAGTGATAAGATTTTCATACGTGATGTCTTCATCTCTGACTGACACAGTGATCTCTGGGCAATATCCACTTTCAAGATATCCAGGCTGCTTTAAACTGGCATTTAAAATAGTTATAGTATTTAATGAGTGCATTTCATTATTAGACATGACAAACAATTTATAAAATATACTGAATAACTAAATATGGCAATGAGTACAATTTTATTCTAAAATTAATTATACATTACTTGAGTTTATTCAGAATCTTTCCTTTACCAGCAGCTGAGATCAAATCAACAACATCATCTGAAATTTGATCCATCATCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409653 lncRNA downstream 29907 1153727 ~ 1154339 (-) True G359148
TU409577 lncRNA downstream 65740 1024434 ~ 1118506 (-) True G359080
TU409644 lncRNA downstream 75534 1108159 ~ 1108712 (-) True G359139
TU409594 lncRNA downstream 76634 1053525 ~ 1107612 (-) True G359092
TU409576 lncRNA downstream 159996 1024050 ~ 1024250 (-) True G359079
TU409629 lncRNA upstream 102185 1287518 ~ 1290073 (-) True G359124
TU409710 lncRNA upstream 278745 1464078 ~ 1464328 (-) True G359194
TU409714 lncRNA upstream 281373 1466706 ~ 1467174 (-) True G359198
TU409715 lncRNA upstream 283912 1469245 ~ 1471571 (-) True G359199
TU409716 lncRNA upstream 286428 1471761 ~ 1471961 (-) True G359200
CI01000152_01140574_01151786.mRNA mRNA downstream 31489 1140213 ~ 1152757 (-) False CI01000152_01140574_01151786
CI01000152_01000620_01011373.mRNA mRNA downstream 172873 1000399 ~ 1011373 (-) True CI01000152_01000620_01011373
CI01000152_00998440_00998727.mRNA mRNA downstream 185399 998269 ~ 998847 (-) True CI01000152_00998440_00998727
CI01000152_00931110_00939265.mRNA mRNA downstream 244981 931110 ~ 939265 (-) True CI01000152_00931110_00939265
CI01000152_00920046_00920561.mRNA mRNA downstream 263685 919226 ~ 920561 (-) True CI01000152_00920046_00920561
CI01000152_01241584_01266061.mRNA mRNA upstream 55817 1241150 ~ 1266061 (-) True CI01000152_01241584_01266061
CI01000152_01296980_01330911.mRNA mRNA upstream 111357 1296690 ~ 1330911 (-) True CI01000152_01296980_01330911
CI01000152_01375796_01378931.mRNA mRNA upstream 190110 1375443 ~ 1380019 (-) True CI01000152_01375796_01378931
CI01000152_01380778_01397434.mRNA mRNA upstream 194807 1380140 ~ 1397434 (-) True CI01000152_01380778_01397434
CI01000152_01415414_01419131.mRNA mRNA upstream 229977 1415310 ~ 1420063 (-) True CI01000152_01415414_01419131
TU409220 other downstream 618962 509697 ~ 565284 (-) False G358758
TU409694 other upstream 152327 1337660 ~ 1344005 (-) True G359178
TU409927 other upstream 705525 1890858 ~ 1893459 (-) True CI01000152_01892421_01893463
TU409936 other upstream 836206 2024633 ~ 2024838 (-) True G359374
TU410397 other upstream 1132935 2318268 ~ 2318734 (-) True G359788
TU410417 other upstream 1183659 2368992 ~ 2459836 (-) True G359800

Expression Profile