RNA id: TU409714


Basic Information

Item Value
RNA id TU409714
length 469
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G359198
representative True

Chromosome Information

Item Value
chromosome id CI01000152
NCBI id null
chromosome length 3381324
location 1466706 ~ 1467174 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGGGGATCCATTTGCAGCTTTATTGAGAATAGTCACCAAGGCAGACAGGGGCAAAGGCAAAGACATAAACGGGACAGGCAATGGTCGAGGCAGGCAGCAGACAAACTGTATCGGGTCACAGGCGGAGATCAGGGCAGGCAGCAAACAAACACAGTCCAGTACACAGGCAAGGTTCAGGGCAGGCAGCAGAGAATCACAACGAATAAACAATCCAACGGTAACAGGGTAAACAGTCCACCGGGGCAAATCAAGACTTCGCAATCAGGTGGTGTGTGTGTGTGTGAGTCTTTTATAGTCCAGGTAGTGTGCTAAACTGTATGTGGCAACAGGTGATTGGTGTGGAGTGTGCATGTGATTGGCAGGGAGGATTATGGGAAATGGAGTCCAGGAACTGACAGGAACAGACGGTGATCGTGACATAACGCCCCCTTCCGGAAGGCGCGTCCTCGCGGCGTAAATGGCACAGATA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409710 lncRNA downstream 2378 1464078 ~ 1464328 (-) True G359194
TU409629 lncRNA downstream 176633 1287518 ~ 1290073 (-) True G359124
TU409631 lncRNA downstream 281373 1184246 ~ 1185333 (-) True G359126
TU409653 lncRNA downstream 312367 1153727 ~ 1154339 (-) True G359148
TU409644 lncRNA downstream 357994 1108159 ~ 1108712 (-) True G359139
TU409715 lncRNA upstream 2071 1469245 ~ 1471571 (-) True G359199
TU409716 lncRNA upstream 4587 1471761 ~ 1471961 (-) True G359200
TU409718 lncRNA upstream 5125 1472299 ~ 1535242 (-) False G359202
TU409720 lncRNA upstream 5125 1472299 ~ 1527614 (-) True G359202
TU409749 lncRNA upstream 62553 1529727 ~ 1530773 (-) True G359224
CI01000152_01429044_01451054.mRNA mRNA downstream 15652 1428865 ~ 1451054 (-) True CI01000152_01429044_01451054
CI01000152_01415414_01419131.mRNA mRNA downstream 46643 1415310 ~ 1420063 (-) True CI01000152_01415414_01419131
CI01000152_01380778_01397434.mRNA mRNA downstream 69272 1380140 ~ 1397434 (-) True CI01000152_01380778_01397434
CI01000152_01375796_01378931.mRNA mRNA downstream 86687 1375443 ~ 1380019 (-) True CI01000152_01375796_01378931
CI01000152_01296980_01330911.mRNA mRNA downstream 135795 1296690 ~ 1330911 (-) True CI01000152_01296980_01330911
CI01000152_01545763_01547190.mRNA mRNA upstream 78160 1545334 ~ 1547190 (-) True CI01000152_01545763_01547190
CI01000152_01557532_01565618.mRNA mRNA upstream 90051 1557225 ~ 1565618 (-) True CI01000152_01557532_01565618
CI01000152_01567745_01570475.mRNA mRNA upstream 100534 1567708 ~ 1570475 (-) False CI01000152_01567745_01570475
CI01000152_01584481_01585153.mRNA mRNA upstream 116657 1583831 ~ 1585268 (-) True CI01000152_01584481_01585153
CI01000152_01755247_01760266.mRNA mRNA upstream 287956 1755130 ~ 1760675 (-) True CI01000152_01755247_01760266
TU409694 other downstream 122701 1337660 ~ 1344005 (-) True G359178
TU409220 other downstream 901422 509697 ~ 565284 (-) False G358758
TU409927 other upstream 423684 1890858 ~ 1893459 (-) True CI01000152_01892421_01893463
TU409936 other upstream 554365 2024633 ~ 2024838 (-) True G359374
TU410397 other upstream 851094 2318268 ~ 2318734 (-) True G359788
TU410417 other upstream 901818 2368992 ~ 2459836 (-) True G359800

Expression Profile