RNA id: TU409749


Basic Information

Item Value
RNA id TU409749
length 909
lncRNA type antisense_over
GC content 0.35
exon number 2
gene id G359224
representative True

Chromosome Information

Item Value
chromosome id CI01000152
NCBI id null
chromosome length 3381324
location 1529727 ~ 1530773 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TACTTTGGAATCGTGGACTGTTTAATAACCAGCGAATAGTTACACAGTGCAATTCAGTATGAATTCATAACAGAGCTGTCTTAACAACCAACCCAAAAGTCAAAAATAATATTACACCACTTGATTATAAAGAGAGCAACTGACAAATGACTCCTTAAATAGGATTTATTCATAATAGTTACAGTCTTTAAATACTTTTCAATTAGTATATTGTGTGTGTTGCTGTGAGAGTTGAGGTATATTGACAGTCCTGTTCTCTGCATGTGAGGCTGTACCTACTGTAGATAATCCAGTTTCAGACTTCATATACATACTACCCACCAGTCTTACAGCACAACACATCCACAACTACACATACCACAAAACTTGTAAAACATGTGAATCGTCATTCCAGCACAGACTGAAAAGGAAACATGTATAATTAAGTTTTAAATACAACTGCAGAGAACTGCGTCTCATATACAGGAATAACGCACTTGCTGGCTGCTATTGATCAGTTTAGGTAATGTGATTATCCATTGATATCTTGCTGAAACTTCATGTTTTTACTCTATTGCCCTTGTTTTATTGTATATTACAGTTATTTTTAACATTACTGCCACCTAGACAGTAATAAATCACAATAAAATTTAATACAATATATATCTACAGTATGTTACAGATCTACAGTATAAAAACTTATAACACATAATACATATAACAGATAGAGTACAAATACTTCTATAGTACAGATAAACTTCATATTATTTCTAAATGGTCACAGTGTTTTCACTCCCAGTCTGACAAAGAACAGGGTCTCCTGAACTCCTGTCCAAACTCATGGATCCATTTAGTAGCCACTGATTGTTACCCATTAACACAGGGCATCCAGCATGTTGTGATTCCCAATCCAGTTCGCCATTCTTTAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409720 lncRNA downstream 2113 1472299 ~ 1527614 (-) True G359202
TU409716 lncRNA downstream 57766 1471761 ~ 1471961 (-) True G359200
TU409715 lncRNA downstream 58156 1469245 ~ 1471571 (-) True G359199
TU409714 lncRNA downstream 62553 1466706 ~ 1467174 (-) True G359198
TU409710 lncRNA downstream 65399 1464078 ~ 1464328 (-) True G359194
TU409764 lncRNA upstream 25184 1555957 ~ 1556330 (-) True G359236
TU409712 lncRNA upstream 36773 1567546 ~ 1570458 (-) True CI01000152_01567745_01570475
TU409751 lncRNA upstream 41347 1572120 ~ 1575964 (-) True G359226
TU409783 lncRNA upstream 125783 1656556 ~ 1656929 (-) True G359255
TU409816 lncRNA upstream 131367 1662140 ~ 1663449 (-) True G359277
CI01000152_01429044_01451054.mRNA mRNA downstream 78673 1428865 ~ 1451054 (-) True CI01000152_01429044_01451054
CI01000152_01415414_01419131.mRNA mRNA downstream 109664 1415310 ~ 1420063 (-) True CI01000152_01415414_01419131
CI01000152_01380778_01397434.mRNA mRNA downstream 132293 1380140 ~ 1397434 (-) True CI01000152_01380778_01397434
CI01000152_01375796_01378931.mRNA mRNA downstream 149708 1375443 ~ 1380019 (-) True CI01000152_01375796_01378931
CI01000152_01296980_01330911.mRNA mRNA downstream 198816 1296690 ~ 1330911 (-) True CI01000152_01296980_01330911
CI01000152_01545763_01547190.mRNA mRNA upstream 14561 1545334 ~ 1547190 (-) True CI01000152_01545763_01547190
CI01000152_01557532_01565618.mRNA mRNA upstream 26452 1557225 ~ 1565618 (-) True CI01000152_01557532_01565618
CI01000152_01567745_01570475.mRNA mRNA upstream 36935 1567708 ~ 1570475 (-) False CI01000152_01567745_01570475
CI01000152_01584481_01585153.mRNA mRNA upstream 53058 1583831 ~ 1585268 (-) True CI01000152_01584481_01585153
CI01000152_01755247_01760266.mRNA mRNA upstream 224357 1755130 ~ 1760675 (-) True CI01000152_01755247_01760266
TU409694 other downstream 185722 1337660 ~ 1344005 (-) True G359178
TU409220 other downstream 964443 509697 ~ 565284 (-) False G358758
TU409927 other upstream 360085 1890858 ~ 1893459 (-) True CI01000152_01892421_01893463
TU409936 other upstream 490766 2024633 ~ 2024838 (-) True G359374
TU410397 other upstream 787495 2318268 ~ 2318734 (-) True G359788
TU410417 other upstream 838219 2368992 ~ 2459836 (-) True G359800

Expression Profile