RNA id: TU409751


Basic Information

Item Value
RNA id TU409751
length 339
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G359226
representative True

Chromosome Information

Item Value
chromosome id CI01000152
NCBI id null
chromosome length 3381324
location 1572120 ~ 1575964 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GATATATACCTGTAGGTCATTTTGGTGTTGGTGCTCACTGAGTCCTTTAAAGAGTACCCATGGATCTGCATAAAATGCCCTAGCTGCTGCAGCTCAAGGGCAGAGTTGGATCTGCCTGCCCAGTGGGGACAACCTGCTGTGTGGTATGAGCTCAATCCTGCCCGTTGTCTCTGGAGGAAGCGGCCTGGAGTTCTCTCAGAGCGCTGAACACTTCTCTGCCTGGGGATGGAAATGTCACTGCAAGCTGCCTTGTACAGCGAATAGTACAGATGGAGGGTCTTGCGTCCGTGCATGATCTCCAGGCGCTGGCCACCCTGCTCTCCCCAAACGATGAAGATG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409712 lncRNA downstream 1662 1567546 ~ 1570458 (-) True CI01000152_01567745_01570475
TU409764 lncRNA downstream 15790 1555957 ~ 1556330 (-) True G359236
TU409718 lncRNA downstream 36878 1472299 ~ 1535242 (-) False G359202
TU409749 lncRNA downstream 41347 1529727 ~ 1530773 (-) True G359224
TU409720 lncRNA downstream 44506 1472299 ~ 1527614 (-) True G359202
TU409783 lncRNA upstream 80592 1656556 ~ 1656929 (-) True G359255
TU409816 lncRNA upstream 86176 1662140 ~ 1663449 (-) True G359277
TU409820 lncRNA upstream 93829 1669793 ~ 1671034 (-) True G359280
TU409823 lncRNA upstream 95610 1671574 ~ 1672239 (-) False G359281
TU409821 lncRNA upstream 95786 1671750 ~ 1672239 (-) True G359281
CI01000152_01567745_01570475.mRNA mRNA downstream 1645 1567708 ~ 1570475 (-) False CI01000152_01567745_01570475
CI01000152_01557532_01565618.mRNA mRNA downstream 6502 1557225 ~ 1565618 (-) True CI01000152_01557532_01565618
CI01000152_01545763_01547190.mRNA mRNA downstream 24930 1545334 ~ 1547190 (-) True CI01000152_01545763_01547190
CI01000152_01429044_01451054.mRNA mRNA downstream 121066 1428865 ~ 1451054 (-) True CI01000152_01429044_01451054
CI01000152_01415414_01419131.mRNA mRNA downstream 152057 1415310 ~ 1420063 (-) True CI01000152_01415414_01419131
CI01000152_01584481_01585153.mRNA mRNA upstream 7867 1583831 ~ 1585268 (-) True CI01000152_01584481_01585153
CI01000152_01755247_01760266.mRNA mRNA upstream 179166 1755130 ~ 1760675 (-) True CI01000152_01755247_01760266
CI01000152_01763662_01769747.mRNA mRNA upstream 187325 1763289 ~ 1769747 (-) True CI01000152_01763662_01769747
CI01000152_01770267_01784486.mRNA mRNA upstream 194127 1770091 ~ 1784486 (-) True CI01000152_01770267_01784486
CI01000152_01892421_01893463.mRNA mRNA upstream 316171 1892135 ~ 1893866 (-) False CI01000152_01892421_01893463
TU409694 other downstream 228115 1337660 ~ 1344005 (-) True G359178
TU409220 other downstream 1006836 509697 ~ 565284 (-) False G358758
TU409927 other upstream 314894 1890858 ~ 1893459 (-) True CI01000152_01892421_01893463
TU409936 other upstream 445575 2024633 ~ 2024838 (-) True G359374
TU410397 other upstream 742304 2318268 ~ 2318734 (-) True G359788
TU410417 other upstream 793028 2368992 ~ 2459836 (-) True G359800

Expression Profile