RNA id: TU409833


Basic Information

Item Value
RNA id TU409833
length 475
lncRNA type intronic
GC content 0.36
exon number 2
gene id G359289
representative True

Chromosome Information

Item Value
chromosome id CI01000152
NCBI id null
chromosome length 3381324
location 1689031 ~ 1689571 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTACGCAGCAAGTTTGAGCTTCCGCAAGAGGTTCGTTCTCGTGCGTCATTCAGGTTTGGTTTAGCTTCTGTGTATGTTCGTTGATCAATGTTTATATGTGAATAAAAACCTATATCTATATCTATAGATCGAGCCTCTTCAGAAGATTTGGACTAAACCACTCAATTCATATGTTTTAGTTTTACGATCTCTTTATGAACTTTTTGAAGCATCAAAGTGTCAGTTTAGCTGCCTATGGAGGGACAGAAAGCTCTCAGATTTCATGAAAAAAAATTGTATTTTATGTTCCGAAGATGAACGAAAGTCTTACCGGTTTGGAACGACATGAGGGTGAGAAATTAAAGGATTAGTTCACTTTCATATAAAATTTTCCTGATAATTTACTCACCTCCATGTCATCCAAGATGTTCATGTCTGTCTTTCTTCAGTCGAAAAGAAATTAAGGTTTTTGATGAGAACATTCCAGGATTATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409823 lncRNA downstream 16792 1671574 ~ 1672239 (-) False G359281
TU409821 lncRNA downstream 16792 1671750 ~ 1672239 (-) True G359281
TU409820 lncRNA downstream 17997 1669793 ~ 1671034 (-) True G359280
TU409816 lncRNA downstream 25582 1662140 ~ 1663449 (-) True G359277
TU409783 lncRNA downstream 32102 1656556 ~ 1656929 (-) True G359255
TU409871 lncRNA upstream 193406 1882977 ~ 1883380 (-) True G359315
TU409874 lncRNA upstream 193983 1883554 ~ 1883942 (-) True G359318
TU409926 lncRNA upstream 200578 1890149 ~ 1893459 (-) False CI01000152_01892421_01893463
TU409994 lncRNA upstream 263441 1953012 ~ 1954853 (-) True G359429
TU409934 lncRNA upstream 356811 2046382 ~ 2059154 (-) False G359372
CI01000152_01584481_01585153.mRNA mRNA downstream 103763 1583831 ~ 1585268 (-) True CI01000152_01584481_01585153
CI01000152_01567745_01570475.mRNA mRNA downstream 118556 1567708 ~ 1570475 (-) False CI01000152_01567745_01570475
CI01000152_01557532_01565618.mRNA mRNA downstream 123413 1557225 ~ 1565618 (-) True CI01000152_01557532_01565618
CI01000152_01545763_01547190.mRNA mRNA downstream 141841 1545334 ~ 1547190 (-) True CI01000152_01545763_01547190
CI01000152_01429044_01451054.mRNA mRNA downstream 237977 1428865 ~ 1451054 (-) True CI01000152_01429044_01451054
CI01000152_01755247_01760266.mRNA mRNA upstream 65559 1755130 ~ 1760675 (-) True CI01000152_01755247_01760266
CI01000152_01763662_01769747.mRNA mRNA upstream 73718 1763289 ~ 1769747 (-) True CI01000152_01763662_01769747
CI01000152_01770267_01784486.mRNA mRNA upstream 80520 1770091 ~ 1784486 (-) True CI01000152_01770267_01784486
CI01000152_01892421_01893463.mRNA mRNA upstream 202564 1892135 ~ 1893866 (-) False CI01000152_01892421_01893463
CI01000152_01905400_01907934.mRNA mRNA upstream 214132 1903703 ~ 1907934 (-) True CI01000152_01905400_01907934
TU409694 other downstream 345026 1337660 ~ 1344005 (-) True G359178
TU409220 other downstream 1123747 509697 ~ 565284 (-) False G358758
TU409927 other upstream 201287 1890858 ~ 1893459 (-) True CI01000152_01892421_01893463
TU409936 other upstream 331968 2024633 ~ 2024838 (-) True G359374
TU410397 other upstream 628697 2318268 ~ 2318734 (-) True G359788
TU410417 other upstream 679421 2368992 ~ 2459836 (-) True G359800

Expression Profile