RNA id: TU409871


Basic Information

Item Value
RNA id TU409871
length 404
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G359315
representative True

Chromosome Information

Item Value
chromosome id CI01000152
NCBI id null
chromosome length 3381324
location 1882977 ~ 1883380 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAAAATATCCATATTTAAAACTTCATAAACTATAATAACTAAAAGTCAAGTTCCAGCGGAAGAGTGACCTCTGACCCGACTTATGATGTAGGATGTAGGAGTAGCGTAAGCTTAGGCGCCTCTCGCAGTTCAAACAAATAGGGCTGGGCAACAAACTCAAGCTCCTCTTCTCTTTTATCGAAATCCTGTGACATTTCTCTTTAAAAATTCTTGTTTTCGACTTCTAATTCATGACTGGTGTTTTGTTTTGCTCTATCCTCTGCGTTTCTGTGCTCATCAATACGTCATGCGTTGGGTCAGAAGTCACTCTTCCACCAGAACTAGACTCGCGTACGGCCGTTTCCAGAAGCCAGTTATTATAGTTTATAAAGTTTTAAATATGGATATGTTTCTTACAAAAACC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409833 lncRNA downstream 193406 1689031 ~ 1689571 (-) True G359289
TU409823 lncRNA downstream 210738 1671574 ~ 1672239 (-) False G359281
TU409821 lncRNA downstream 210738 1671750 ~ 1672239 (-) True G359281
TU409820 lncRNA downstream 211943 1669793 ~ 1671034 (-) True G359280
TU409816 lncRNA downstream 219528 1662140 ~ 1663449 (-) True G359277
TU409874 lncRNA upstream 174 1883554 ~ 1883942 (-) True G359318
TU409926 lncRNA upstream 6769 1890149 ~ 1893459 (-) False CI01000152_01892421_01893463
TU409994 lncRNA upstream 69632 1953012 ~ 1954853 (-) True G359429
TU409934 lncRNA upstream 163002 2046382 ~ 2059154 (-) False G359372
TU409933 lncRNA upstream 172451 2055831 ~ 2059154 (-) True G359372
CI01000152_01770267_01784486.mRNA mRNA downstream 98491 1770091 ~ 1784486 (-) True CI01000152_01770267_01784486
CI01000152_01763662_01769747.mRNA mRNA downstream 113230 1763289 ~ 1769747 (-) True CI01000152_01763662_01769747
CI01000152_01755247_01760266.mRNA mRNA downstream 122302 1755130 ~ 1760675 (-) True CI01000152_01755247_01760266
CI01000152_01584481_01585153.mRNA mRNA downstream 297709 1583831 ~ 1585268 (-) True CI01000152_01584481_01585153
CI01000152_01567745_01570475.mRNA mRNA downstream 312502 1567708 ~ 1570475 (-) False CI01000152_01567745_01570475
CI01000152_01892421_01893463.mRNA mRNA upstream 8755 1892135 ~ 1893866 (-) False CI01000152_01892421_01893463
CI01000152_01905400_01907934.mRNA mRNA upstream 20323 1903703 ~ 1907934 (-) True CI01000152_01905400_01907934
CI01000152_01917798_01946700.mRNA mRNA upstream 33323 1916703 ~ 1948064 (-) True CI01000152_01917798_01946700
CI01000152_01999033_01999195.mRNA mRNA upstream 115403 1998783 ~ 1999195 (-) True CI01000152_01999033_01999195
CI01000152_02006897_02010593.mRNA mRNA upstream 122972 2006352 ~ 2010593 (-) True CI01000152_02006897_02010593
TU409694 other downstream 538972 1337660 ~ 1344005 (-) True G359178
TU409220 other downstream 1317693 509697 ~ 565284 (-) False G358758
TU409927 other upstream 7478 1890858 ~ 1893459 (-) True CI01000152_01892421_01893463
TU409936 other upstream 138159 2024633 ~ 2024838 (-) True G359374
TU410397 other upstream 434888 2318268 ~ 2318734 (-) True G359788
TU410417 other upstream 485612 2368992 ~ 2459836 (-) True G359800

Expression Profile