RNA id: TU409994


Basic Information

Item Value
RNA id TU409994
length 220
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G359429
representative True

Chromosome Information

Item Value
chromosome id CI01000152
NCBI id null
chromosome length 3381324
location 1953012 ~ 1954853 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACCACATCCAACAGGCCTAACTGTCGACGCAAGAGGAAGCTGTCTGAAAGGGACGTCCAGCATCATGTAGTAACCTGTCCACTGTTCTGGAAGAGGAATGGCTCAAAATCCCTCTGGCCACTGTGAAGGACTTGTATCTGTCATTCCCAAGGTGAATTGATGCTGTACTGGACGCAAAAGGAGGCCCTACACCATACTGATAAATTAAAGTGGTCTAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409926 lncRNA downstream 59553 1890149 ~ 1893459 (-) False CI01000152_01892421_01893463
TU409874 lncRNA downstream 69070 1883554 ~ 1883942 (-) True G359318
TU409871 lncRNA downstream 69632 1882977 ~ 1883380 (-) True G359315
TU409833 lncRNA downstream 263441 1689031 ~ 1689571 (-) True G359289
TU409823 lncRNA downstream 280773 1671574 ~ 1672239 (-) False G359281
TU409934 lncRNA upstream 91529 2046382 ~ 2059154 (-) False G359372
TU409933 lncRNA upstream 100978 2055831 ~ 2059154 (-) True G359372
TU409944 lncRNA upstream 111710 2066563 ~ 2068267 (-) True CI01000152_02066678_02068178
TU409946 lncRNA upstream 132478 2099147 ~ 2111682 (-) True G359381
TU410299 lncRNA upstream 205499 2160352 ~ 2175594 (-) True G359709
CI01000152_01917798_01946700.mRNA mRNA downstream 4948 1916703 ~ 1948064 (-) True CI01000152_01917798_01946700
CI01000152_01905400_01907934.mRNA mRNA downstream 45078 1903703 ~ 1907934 (-) True CI01000152_01905400_01907934
CI01000152_01892421_01893463.mRNA mRNA downstream 59146 1892135 ~ 1893866 (-) False CI01000152_01892421_01893463
CI01000152_01770267_01784486.mRNA mRNA downstream 168526 1770091 ~ 1784486 (-) True CI01000152_01770267_01784486
CI01000152_01763662_01769747.mRNA mRNA downstream 183265 1763289 ~ 1769747 (-) True CI01000152_01763662_01769747
CI01000152_01999033_01999195.mRNA mRNA upstream 43930 1998783 ~ 1999195 (-) True CI01000152_01999033_01999195
CI01000152_02006897_02010593.mRNA mRNA upstream 51499 2006352 ~ 2010593 (-) True CI01000152_02006897_02010593
CI01000152_02015257_02024292.mRNA mRNA upstream 60404 2015257 ~ 2024292 (-) False CI01000152_02015257_02024292
CI01000152_02066678_02068178.mRNA mRNA upstream 111577 2066430 ~ 2068284 (-) False CI01000152_02066678_02068178
CI01000152_02086974_02089993.mRNA mRNA upstream 131635 2086488 ~ 2090050 (-) False CI01000152_02086974_02089993
TU409927 other downstream 59553 1890858 ~ 1893459 (-) True CI01000152_01892421_01893463
TU409694 other downstream 609007 1337660 ~ 1344005 (-) True G359178
TU409220 other downstream 1387728 509697 ~ 565284 (-) False G358758
TU409936 other upstream 66686 2024633 ~ 2024838 (-) True G359374
TU410397 other upstream 363415 2318268 ~ 2318734 (-) True G359788
TU410417 other upstream 414139 2368992 ~ 2459836 (-) True G359800

Expression Profile