RNA id: TU409934


Basic Information

Item Value
RNA id TU409934
length 1099
lncRNA type antisense_over
GC content 0.35
exon number 2
gene id G359372
representative False

Chromosome Information

Item Value
chromosome id CI01000152
NCBI id null
chromosome length 3381324
location 2046382 ~ 2059154 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTGTTTTGCTTGTTCTGTCCAGTGGAATCAAATTGACACAGACTCACTTTCATAAGATGCATTTTAATAGAAGCTAAAAAACAACTGCATGAAACATTTTTTTCAAGATGTGTTAATAACAAATTAAGATGTGAGATATTTGTGATTAACAGTGCATGTTATGTTAGAACAATGTGTTAATTATCATTCTTATCAGGACATCAGATTACAGCAGATACAACAATTACAAATTTAATATACATACAGTCTCACTAAAGTCAAAGTTAAGATGAATTTTATTGTTAGTTTGAAATTATCCTATATTTTAAAGCTTTTTGTTTCTTTGTTTGTTCAGATTTCCTGATCAGAAATTCATCTTTGGCACTGGCATAGAAAAATACATCGTAACAGACAATATGGTTTGTCGTAACCTGATTCATTCACCACTCTTCCAGGGCTCAGTCTGCACTGATGCTTTATCCGAACTTTTGTCTATCATGAAACGGATCTGTACTCCAGGCGCAATGTCCAGTTTGGATTTGTACTGATAAATATAATAATTCTCATTATCATCCTGCATCATTTCAAACTTCACAGCATAGCTATATGTGTAATATTCATCATTTTTATTTTGTGAACTACTGTAAAACCCCACCCATGAGTAGGAGAAAGTATCTTTCCAGTCTGTGAAGGTCTTCTTGATATAAAGCCGTGCAGAAGCTTTACCGTCTTCAGCGAAGAGCTGCAGACCAGCATCATCAAGCTCCGGTCCATAAAAGAATTCTGGACCATTTAATGAGCGTTCAGGCTGAAGACTAGGATTCAGAGTGCTACAAACTGATGGTAATATTGTCACTACTTCATCGCTCTCCCAGGGTGTAGTTTGTGCTAAAACATTGTTATATTTTTTGTCCAGCAGAAAACGGATTTGAACTCCAGGAGCAATAGCCAAATTGAAATTGTACTGGTAAACATCATAATTGTGTGTGAAATGGTTTTCGGTCTTTGCAAACTTATCAGCATACTGATATGTGGAATAGCCATCATTTTTATCTTGTGAACTTTTGTAAAACCCAACCCATGAGGCGTAGTTTGTGCTAAAACATTGTTATATTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU409994 lncRNA downstream 91529 1953012 ~ 1954853 (-) True G359429
TU409926 lncRNA downstream 152923 1890149 ~ 1893459 (-) False CI01000152_01892421_01893463
TU409874 lncRNA downstream 162440 1883554 ~ 1883942 (-) True G359318
TU409871 lncRNA downstream 163002 1882977 ~ 1883380 (-) True G359315
TU409833 lncRNA downstream 356811 1689031 ~ 1689571 (-) True G359289
TU409944 lncRNA upstream 7409 2066563 ~ 2068267 (-) True CI01000152_02066678_02068178
TU409946 lncRNA upstream 28177 2099147 ~ 2111682 (-) True G359381
TU410299 lncRNA upstream 101198 2160352 ~ 2175594 (-) True G359709
TU410288 lncRNA upstream 162774 2221928 ~ 2226863 (-) True G359701
TU410331 lncRNA upstream 191326 2250480 ~ 2252239 (-) True G359737
CI01000152_02015257_02024292.mRNA mRNA downstream 22090 2015257 ~ 2024292 (-) False CI01000152_02015257_02024292
CI01000152_02006897_02010593.mRNA mRNA downstream 35789 2006352 ~ 2010593 (-) True CI01000152_02006897_02010593
CI01000152_01999033_01999195.mRNA mRNA downstream 47187 1998783 ~ 1999195 (-) True CI01000152_01999033_01999195
CI01000152_01917798_01946700.mRNA mRNA downstream 98318 1916703 ~ 1948064 (-) True CI01000152_01917798_01946700
CI01000152_01905400_01907934.mRNA mRNA downstream 138448 1903703 ~ 1907934 (-) True CI01000152_01905400_01907934
CI01000152_02066678_02068178.mRNA mRNA upstream 7276 2066430 ~ 2068284 (-) False CI01000152_02066678_02068178
CI01000152_02086974_02089993.mRNA mRNA upstream 27334 2086488 ~ 2090050 (-) False CI01000152_02086974_02089993
CI01000152_02190690_02206511.mRNA mRNA upstream 131528 2190682 ~ 2206658 (-) True CI01000152_02190690_02206511
CI01000152_02334753_02345817.mRNA mRNA upstream 275014 2334168 ~ 2345817 (-) True CI01000152_02334753_02345817
CI01000152_02427978_02434593.mRNA mRNA upstream 368365 2427519 ~ 2434593 (-) True CI01000152_02427978_02434593
TU409936 other downstream 21544 2024633 ~ 2024838 (-) True G359374
TU409927 other downstream 152923 1890858 ~ 1893459 (-) True CI01000152_01892421_01893463
TU409694 other downstream 702377 1337660 ~ 1344005 (-) True G359178
TU409220 other downstream 1481098 509697 ~ 565284 (-) False G358758
TU410397 other upstream 259114 2318268 ~ 2318734 (-) True G359788
TU410417 other upstream 309838 2368992 ~ 2459836 (-) True G359800

Expression Profile