RNA id: TU410343


Basic Information

Item Value
RNA id TU410343
length 1226
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G359745
representative True

Chromosome Information

Item Value
chromosome id CI01000152
NCBI id null
chromosome length 3381324
location 2275843 ~ 2316256 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTTCATCTATGCAGTTGCCCAGCTAAAGCAATATATTCACCAAGAGAATCATTAAGAATCTGAACGCACCAGTTCTTCAGAGAGGTAGGGCTCTTCTTCCTGAAGAATCATGATGAATTGAGCTTTTGCAATCATCCCACTTGAATGCACTGTGTAACAGATCTTTCTCATACTATCCTGACTGCTTAAATTACAATGTGTGATTTCAGAATATAATTCCTCATGAATTATTCTCTGCTCACGCAGTTTATCTGCAATGCTCTTCACATTTTTAACCCTTTGAATGAGAGCCGATCTGTGTTTATCAAAAAATTTTGCTTTATCAATCTCAGAATTCAGTTGCGGCTCATCTTGTACTTTCTTTTGATTTAACTGAACAAGTTCGTCTTTCCATATTGTGGCAGTCCACACAGATTTCTTGTCCTCCTCTCTGATAAGATTCATTTGTACGTCACCATCCTGAAGCTGTTTGACCTTGAAGAAGTTTGGATCAACATCTGTTGTAAATGAAATCCCTTCTACAGGATGGACAGAAGCACCAGGAACCTCAAGAAGGTGCGGTGTTTTCATCCGAAATGGTTTGTTAGGTCTGGGATGGCTGATCGGATGACTTGATTTTTCATTATGCTCAACTTTCTCTTTTGAACAAGTGTCATTCACTGGAAAAAAGTAGATGTGAAGAATGAGAGGATCTTTACAGCGCATGTAGAGAAGAAGACTGCAGTGTTCTTCCCACTTCATGATCCAGCTTATAATTAGAGTTGTAAGAGAGAAGGATGGTTGGAGTATTTTGGCATGATAACGGGTCAACTCTACAGATTGTAAAGATACTCCTTCATTTCTTTTGCTCAGGAGCTTCACAGCATCATTGAGAGAGGGGTCAGACTCTGCTAAACAGGCGTAGTGAGGCAGATGGGCCTCCTCCAGTTTCCCTGAGATCACGGTCACATCAATCACTGGACCAATTCGCTCACACTGAAGCCTCTCCAGCTCTGCACTGAGGAAACCTCCATCCACTGCATGGTACTGGAGAGTGACGTCACCAGCACAGACCCATCGCATTCTGGTCCTGCTGCACTCAAATCGACCCGCCTGAGTGCTGATCCTGAACTTTGACCCTCCTTCATCTCTACAGACTGACGGCTCCACCTGAACCCACTGATCACTATCAACAATATGAACACAAGACTGACACACTGGAAGCAGGTGAAGATCCAGTCCAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU410331 lncRNA downstream 23604 2250480 ~ 2252239 (-) True G359737
TU410288 lncRNA downstream 48980 2221928 ~ 2226863 (-) True G359701
TU410299 lncRNA downstream 100249 2160352 ~ 2175594 (-) True G359709
TU409946 lncRNA downstream 164161 2099147 ~ 2111682 (-) True G359381
TU409944 lncRNA downstream 207576 2066563 ~ 2068267 (-) True CI01000152_02066678_02068178
TU410405 lncRNA upstream 12739 2328995 ~ 2329399 (-) True G359791
TU410439 lncRNA upstream 301786 2618042 ~ 2620499 (-) True G359819
TU410533 lncRNA upstream 321458 2637714 ~ 2643327 (-) False G359911
TU410534 lncRNA upstream 321525 2637781 ~ 2643327 (-) True G359911
TU410506 lncRNA upstream 334436 2650692 ~ 2655413 (-) True G359884
CI01000152_02190690_02206511.mRNA mRNA downstream 69185 2190682 ~ 2206658 (-) True CI01000152_02190690_02206511
CI01000152_02086974_02089993.mRNA mRNA downstream 185793 2086488 ~ 2090050 (-) False CI01000152_02086974_02089993
CI01000152_02066678_02068178.mRNA mRNA downstream 207559 2066430 ~ 2068284 (-) False CI01000152_02066678_02068178
CI01000152_02015257_02024292.mRNA mRNA downstream 251551 2015257 ~ 2024292 (-) False CI01000152_02015257_02024292
CI01000152_02006897_02010593.mRNA mRNA downstream 265250 2006352 ~ 2010593 (-) True CI01000152_02006897_02010593
CI01000152_02334753_02345817.mRNA mRNA upstream 17912 2334168 ~ 2345817 (-) True CI01000152_02334753_02345817
CI01000152_02427978_02434593.mRNA mRNA upstream 111263 2427519 ~ 2434593 (-) True CI01000152_02427978_02434593
CI01000152_02440117_02451100.mRNA mRNA upstream 123861 2440117 ~ 2451822 (-) True CI01000152_02440117_02451100
TU409936 other downstream 251005 2024633 ~ 2024838 (-) True G359374
TU409927 other downstream 382384 1890858 ~ 1893459 (-) True CI01000152_01892421_01893463
TU409694 other downstream 931838 1337660 ~ 1344005 (-) True G359178
TU409220 other downstream 1710559 509697 ~ 565284 (-) False G358758
TU410397 other upstream 2012 2318268 ~ 2318734 (-) True G359788
TU410417 other upstream 52736 2368992 ~ 2459836 (-) True G359800

Expression Profile