RNA id: TU410670



Basic Information


Item Value
RNA id TU410670
length 473
lncRNA type intronic
GC content 0.42
exon number 1
gene id G360038
representative True

Chromosome Information


Item Value
chromosome id CI01000152
NCBI id null
chromosome length 3381324
location 2937935 ~ 2938407 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAAATGTGATGGATGCACTTTGCTGCGAGAACATGTGCACACACTAAAAACATACTAGGCTTGGGTAAAAAAAAAAAAAAAAAAAAAAAAACAGCACCTCTGATACACCATCTTCAGTGCTGAGTGATCTTTTCTGTTTGTGTACTACAATAAACAAAGAAAACACACTGTGTGTGTGTTTCAAAGGAAGGGTGAAAAACTACCTCACCCTCAATTACGATCTAATTCAGGAACAATGCTCCAAAAGTGGGGCTAGAGGGAGAAGCAGATCCAAAATATTTCCTATCTTAGCTAAATATCAGCGCTGACAGCCCTTTGGAAACCTCTGTTTGGGATGCGCATGGAGTTTGTGTGTCTGTGTGCGTGTTGGAGTCGTCACAGACGTCGAGGTGTGAGTCTGAACATAACCTAAAGCGAGCGCGATCTCTTCTCTGCTCACGTCTGTCCCAGCCTAACTAAATAAGCTCTCTCTC

Function


GO: NA

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU410669 lncRNA downstream 2433 2935268 ~ 2935502 (-) True G360037
TU410667 lncRNA downstream 9561 2928148 ~ 2928374 (-) True G360035
TU410664 lncRNA downstream 14570 2922829 ~ 2923365 (-) True G360032
TU410662 lncRNA downstream 16407 2921208 ~ 2921528 (-) True G360030
TU410602 lncRNA downstream 145325 2788385 ~ 2792610 (-) True G359971
TU410658 lncRNA upstream 12197 2950604 ~ 2950951 (-) True G360026
TU410673 lncRNA upstream 20639 2959046 ~ 2959272 (-) True G360041
TU410674 lncRNA upstream 21417 2959824 ~ 2960219 (-) True G360042
TU410675 lncRNA upstream 22378 2960785 ~ 2961125 (-) True G360043
TU410680 lncRNA upstream 35939 2974346 ~ 2974592 (-) True G360048
CI01000152_02440117_02451100.mRNA mRNA downstream 486113 2440117 ~ 2451822 (-) True CI01000152_02440117_02451100
CI01000152_02427978_02434593.mRNA mRNA downstream 503342 2427519 ~ 2434593 (-) True CI01000152_02427978_02434593
CI01000152_02334753_02345817.mRNA mRNA downstream 592118 2334168 ~ 2345817 (-) True CI01000152_02334753_02345817
CI01000152_02190690_02206511.mRNA mRNA downstream 731277 2190682 ~ 2206658 (-) True CI01000152_02190690_02206511
CI01000152_02086974_02089993.mRNA mRNA downstream 847885 2086488 ~ 2090050 (-) False CI01000152_02086974_02089993
TU410417 other downstream 478099 2368992 ~ 2459836 (-) True G359800
TU410397 other downstream 619201 2318268 ~ 2318734 (-) True G359788
TU409936 other downstream 913097 2024633 ~ 2024838 (-) True G359374
TU409927 other downstream 1044476 1890858 ~ 1893459 (-) True CI01000152_01892421_01893463
TU409694 other downstream 1593930 1337660 ~ 1344005 (-) True G359178

Expression Profile


TU410670 Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
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TU410670 Expression in each Bioproject

Bar chart with 11 bars.
TU410670 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 50.
End of interactive chart.