RNA id: TU410685


Basic Information

Item Value
RNA id TU410685
length 418
lncRNA type intronic
GC content 0.39
exon number 1
gene id G360053
representative True

Chromosome Information

Item Value
chromosome id CI01000152
NCBI id null
chromosome length 3381324
location 2982557 ~ 2982974 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTTATTATATCAATTGTCTCAGCTATTGATGTTTCATTCCCCAATAGTTTTTAATCACAAATAATCTCAGTTTATACAGAGTTCACTTAGTACTATGTGCAGAATGTCAGCTGATGACATGTCACACAAAATCTTTTCCATGTGGTTAAAGTTCAAAACATTTTCTACTCAACTACAATAAAGTCTTACAGAATGGAGCTGTGTTGTGCGTTTCCTTTTAGCTGCGGTCTCGGTCCCAGAGCGATGTGTAACTGTTTATAATTACCATGCAGAGTGGCGGCCCCCGAGCGGCCGTACATCAGCCCACTAACTCAACACTGTGAGTGGCTTTTCATCAACAGTCAGAATAAGGGATAAAAACAAGGTTTTAGTAATAGCTCTTTATCACAACCTCCTGGATCCATTCCTACACATTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU410684 lncRNA downstream 5340 2976807 ~ 2977217 (-) True G360052
TU410682 lncRNA downstream 6714 2975543 ~ 2975843 (-) True G360050
TU410681 lncRNA downstream 7474 2974846 ~ 2975083 (-) True G360049
TU410680 lncRNA downstream 7965 2974346 ~ 2974592 (-) True G360048
TU410675 lncRNA downstream 21432 2960785 ~ 2961125 (-) True G360043
TU410686 lncRNA upstream 1894 2984868 ~ 2985521 (-) True G360054
TU410687 lncRNA upstream 2893 2985867 ~ 2986143 (-) True G360055
TU410688 lncRNA upstream 3509 2986483 ~ 2986811 (-) True G360056
TU410690 lncRNA upstream 9172 2992146 ~ 2992388 (-) True G360058
TU410691 lncRNA upstream 13928 2996902 ~ 2997129 (-) True G360059
CI01000152_02440117_02451100.mRNA mRNA downstream 530735 2440117 ~ 2451822 (-) True CI01000152_02440117_02451100
CI01000152_02427978_02434593.mRNA mRNA downstream 547964 2427519 ~ 2434593 (-) True CI01000152_02427978_02434593
CI01000152_02334753_02345817.mRNA mRNA downstream 636740 2334168 ~ 2345817 (-) True CI01000152_02334753_02345817
CI01000152_02190690_02206511.mRNA mRNA downstream 775899 2190682 ~ 2206658 (-) True CI01000152_02190690_02206511
CI01000152_02086974_02089993.mRNA mRNA downstream 892507 2086488 ~ 2090050 (-) False CI01000152_02086974_02089993
TU410417 other downstream 522721 2368992 ~ 2459836 (-) True G359800
TU410397 other downstream 663823 2318268 ~ 2318734 (-) True G359788
TU409936 other downstream 957719 2024633 ~ 2024838 (-) True G359374
TU409927 other downstream 1089098 1890858 ~ 1893459 (-) True CI01000152_01892421_01893463
TU409694 other downstream 1638552 1337660 ~ 1344005 (-) True G359178

Expression Profile