RNA id: TU410686


Basic Information

Item Value
RNA id TU410686
length 654
lncRNA type antisense_over
GC content 0.45
exon number 1
gene id G360054
representative True

Chromosome Information

Item Value
chromosome id CI01000152
NCBI id null
chromosome length 3381324
location 2984868 ~ 2985521 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTACCTCCAACAATAACCATCTTAACTAGCTTGTACAGGTAATACACCAGCACGGATCATTCTAAAACTGGTTAAGACCATCTTGGAATGTTAACGGGTCTAAACTGTTTCTTCATCAGCAGGGTTATTCTGTTGCTGTGGACTGTATTGATTGCATAAGCTTGTTTAATCAAGCATAATCTTGTTCGGCTTCATAAAAATTTAATCACTCACCAGCCTGGTTGGTCGTGATGTCTATGGAGACATGCTGAGCAGGATACGGGCTCTTGTTGGTGACGCCGTTGACCGCCTGGATCTCAAACGTGTAGAGAGTGTGTGCCAGAAGGTTACTGATGAAGACTCTGGATTCAGTCAGTCCCAGCTGCCGGGGCTGAAATTCCACATTATCATCGCAATGGGAGCAGGATCGGCGGTCAGCTTGGCATTTCTTACAAACAATATTGTACATGACGTCCTCGCGACCCCCTGTCTCACGCGGGGAGTGCCATTCCAGAGTCACAGAGGTCTCGTTCACGATTGAGATGACATTTCTTGGCCCAGAGGGAACACCTGACGAGAAAGTAGAAAGACAAGTGAGAATACTGAAATTCATTAAGCAAGCTATGAAAATGATACTGCTAAAGAAATGTTGTTAATGCCAGTGGGAAAAAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU410685 lncRNA downstream 1894 2982557 ~ 2982974 (-) True G360053
TU410684 lncRNA downstream 7651 2976807 ~ 2977217 (-) True G360052
TU410682 lncRNA downstream 9025 2975543 ~ 2975843 (-) True G360050
TU410681 lncRNA downstream 9785 2974846 ~ 2975083 (-) True G360049
TU410680 lncRNA downstream 10276 2974346 ~ 2974592 (-) True G360048
TU410687 lncRNA upstream 346 2985867 ~ 2986143 (-) True G360055
TU410688 lncRNA upstream 962 2986483 ~ 2986811 (-) True G360056
TU410690 lncRNA upstream 6625 2992146 ~ 2992388 (-) True G360058
TU410691 lncRNA upstream 11381 2996902 ~ 2997129 (-) True G360059
TU410699 lncRNA upstream 28372 3013893 ~ 3014287 (-) True G360067
CI01000152_02440117_02451100.mRNA mRNA downstream 533046 2440117 ~ 2451822 (-) True CI01000152_02440117_02451100
CI01000152_02427978_02434593.mRNA mRNA downstream 550275 2427519 ~ 2434593 (-) True CI01000152_02427978_02434593
CI01000152_02334753_02345817.mRNA mRNA downstream 639051 2334168 ~ 2345817 (-) True CI01000152_02334753_02345817
CI01000152_02190690_02206511.mRNA mRNA downstream 778210 2190682 ~ 2206658 (-) True CI01000152_02190690_02206511
CI01000152_02086974_02089993.mRNA mRNA downstream 894818 2086488 ~ 2090050 (-) False CI01000152_02086974_02089993
TU410417 other downstream 525032 2368992 ~ 2459836 (-) True G359800
TU410397 other downstream 666134 2318268 ~ 2318734 (-) True G359788
TU409936 other downstream 960030 2024633 ~ 2024838 (-) True G359374
TU409927 other downstream 1091409 1890858 ~ 1893459 (-) True CI01000152_01892421_01893463
TU409694 other downstream 1640863 1337660 ~ 1344005 (-) True G359178

Expression Profile