RNA id: TU410688


Basic Information

Item Value
RNA id TU410688
length 329
lncRNA type intronic
GC content 0.45
exon number 1
gene id G360056
representative True

Chromosome Information

Item Value
chromosome id CI01000152
NCBI id null
chromosome length 3381324
location 2986483 ~ 2986811 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGTCATGCTTGCGATTGAGTTTCTGGTTTATCGACTACTTTAAACGTTTCATCGTCAGAGTCAGGCTTGAACTGATAAGGTAAAATCAATGCCATCTTTTGTCCATACATTGTATACAATCTCTTGAGAACTGATAAGCCTCCGGAGCTGTAATTCAGTTATGGCAAAGGGCATTCAGTTTCCGACATGCGCTGTACATGGTAGACCAATCACAACAGACTGGGCCATTTTTTGATAATCACCAACAGGTGTGCAACTCCACTAATTTGTTGTTTGCTGAGGCAGGAGCCTGCTGCCGTCCACCATGATGGGGAGGAGCAGGGAATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU410687 lncRNA downstream 340 2985867 ~ 2986143 (-) True G360055
TU410686 lncRNA downstream 962 2984868 ~ 2985521 (-) True G360054
TU410685 lncRNA downstream 3509 2982557 ~ 2982974 (-) True G360053
TU410684 lncRNA downstream 9266 2976807 ~ 2977217 (-) True G360052
TU410682 lncRNA downstream 10640 2975543 ~ 2975843 (-) True G360050
TU410690 lncRNA upstream 5335 2992146 ~ 2992388 (-) True G360058
TU410691 lncRNA upstream 10091 2996902 ~ 2997129 (-) True G360059
TU410699 lncRNA upstream 27082 3013893 ~ 3014287 (-) True G360067
TU410700 lncRNA upstream 30405 3017216 ~ 3017443 (-) True G360068
TU410701 lncRNA upstream 30805 3017616 ~ 3017890 (-) True G360069
CI01000152_02440117_02451100.mRNA mRNA downstream 534661 2440117 ~ 2451822 (-) True CI01000152_02440117_02451100
CI01000152_02427978_02434593.mRNA mRNA downstream 551890 2427519 ~ 2434593 (-) True CI01000152_02427978_02434593
CI01000152_02334753_02345817.mRNA mRNA downstream 640666 2334168 ~ 2345817 (-) True CI01000152_02334753_02345817
CI01000152_02190690_02206511.mRNA mRNA downstream 779825 2190682 ~ 2206658 (-) True CI01000152_02190690_02206511
CI01000152_02086974_02089993.mRNA mRNA downstream 896433 2086488 ~ 2090050 (-) False CI01000152_02086974_02089993
TU410417 other downstream 526647 2368992 ~ 2459836 (-) True G359800
TU410397 other downstream 667749 2318268 ~ 2318734 (-) True G359788
TU409936 other downstream 961645 2024633 ~ 2024838 (-) True G359374
TU409927 other downstream 1093024 1890858 ~ 1893459 (-) True CI01000152_01892421_01893463
TU409694 other downstream 1642478 1337660 ~ 1344005 (-) True G359178

Expression Profile