RNA id: TU410699


Basic Information

Item Value
RNA id TU410699
length 395
lncRNA type intronic
GC content 0.33
exon number 1
gene id G360067
representative True

Chromosome Information

Item Value
chromosome id CI01000152
NCBI id null
chromosome length 3381324
location 3013893 ~ 3014287 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCCTGAGTAAGATATTTAACATAAAAATGTTTATAGTCGACAAGAAAAAAAAAAATGCTGAATTTATTAAAATGGCCCCATTCAAAAGTTTGGGAACCATTGGTTCTTAATTTGAATTTGAAGATCGAGGTAAATTGTACTTATTTTGTCTTCCAGGAAGCATGCAAGTATCGTCTGTTGCTTCAGAAGGGCAGTACTAAATGGAAAAAAAAAAAAAAAAAAAGATATTTAACAAAATAAGAAATTTGGACATCTTCATCCTGTTAAAAAGTTTTCACCCCCCGGCTCTTAATGCGTTGTGTTTCCTTCTGGAGCATCAGTGAATGTTTGAACCTTTTTTAATAGTTGTGTTTGAGTCCCTCTATTGTCTTCAGTGTGAAAAGATGGATCTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU410691 lncRNA downstream 16764 2996902 ~ 2997129 (-) True G360059
TU410690 lncRNA downstream 21505 2992146 ~ 2992388 (-) True G360058
TU410688 lncRNA downstream 27082 2986483 ~ 2986811 (-) True G360056
TU410687 lncRNA downstream 27750 2985867 ~ 2986143 (-) True G360055
TU410686 lncRNA downstream 28372 2984868 ~ 2985521 (-) True G360054
TU410700 lncRNA upstream 2929 3017216 ~ 3017443 (-) True G360068
TU410701 lncRNA upstream 3329 3017616 ~ 3017890 (-) True G360069
TU410702 lncRNA upstream 3884 3018171 ~ 3018430 (-) True G360070
TU410708 lncRNA upstream 15031 3029318 ~ 3050071 (-) False G360074
TU410707 lncRNA upstream 35280 3049567 ~ 3065869 (-) True G360074
CI01000152_02440117_02451100.mRNA mRNA downstream 562071 2440117 ~ 2451822 (-) True CI01000152_02440117_02451100
CI01000152_02427978_02434593.mRNA mRNA downstream 579300 2427519 ~ 2434593 (-) True CI01000152_02427978_02434593
CI01000152_02334753_02345817.mRNA mRNA downstream 668076 2334168 ~ 2345817 (-) True CI01000152_02334753_02345817
CI01000152_02190690_02206511.mRNA mRNA downstream 807235 2190682 ~ 2206658 (-) True CI01000152_02190690_02206511
CI01000152_02086974_02089993.mRNA mRNA downstream 923843 2086488 ~ 2090050 (-) False CI01000152_02086974_02089993
TU410417 other downstream 554057 2368992 ~ 2459836 (-) True G359800
TU410397 other downstream 695159 2318268 ~ 2318734 (-) True G359788
TU409936 other downstream 989055 2024633 ~ 2024838 (-) True G359374
TU409927 other downstream 1120434 1890858 ~ 1893459 (-) True CI01000152_01892421_01893463
TU409694 other downstream 1669888 1337660 ~ 1344005 (-) True G359178

Expression Profile