RNA id: CI01000154_00594797_00604722.mRNA


Basic Information

Item Value
RNA id CI01000154_00594797_00604722.mRNA
length 1111
RNA type mRNA
GC content 0.38
exon number 2
gene id CI01000154_00594797_00604722
representative True

Chromosome Information

Item Value
chromosome id CI01000154
NCBI id null
chromosome length 1600967
location 594714 ~ 605354 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTGCAAACAAACACTGTCGATGTGATGCGATAATGTACTGTAAATGCTTTATGCATCGTATTAACTTTTTGATTATATCTAAAAACATAGCCTACAAAATAGCTATATAGCTAGGCTATTAGCAGATAGGCCTACAATCAATAGAAAATGTTTGTTTTTTTACCATTTCCCTGCCACTTCAGTAGGCTACATTTGGCCTTACATATATTTTTTTTTTCTAAGAATGTGTTCAATATTTTCAACTAAATGTATTTAGATGATAGGCTATATTTAATGCATTTATTTATAATAAACAGGTGATGTTTACAACATAACTGTACAATGTTTATGTTTAATATTTTCGCCGTTTGTTTTGAACGTTGAAGTTCAATTGTTAGTTTTTATGTAATTCTGCAGATATTAGATACAGATGTAATTGTATAATCATAGAGATTATAGGCTATATTACACATTGTTCTGAAGTTGTTTTTTAAATTAAACTCCTATGCTAGGCTGTGTCTGTTAGCCACTATGTCGTCAAAGTGAGTTTAGAATGTCGCGCGTTAAAAACATGCAACTCTTCACATTTTACTCACTCACTCGGTTTGTAGCTGATCTAGTCTGATTGATTGATACCATCAGTGGTTCATCATGGGACAGAGAAGTTCACGAGTACGATCTTTTACGGATGGCGAGCAGGTTTACGACCCAAACCCCAGCAGCAGCAGCACGGCGGAGAAACATCCTCATCGGCCTGATGAGAAGCCTGTTGATGTTGCTGAGGGAGAGGGAGACGTGCTTCCCAACTCGCGCCCGAAAAAGAACAAGAAAGTGGGCAACTTCTTTAAGTGGCTCTCTTTCGGTGGGAAGAAAAAATCCACCAAAAACAAGAGCTCAGATCAGTGTGAAATGAAGGACCAAGATATTGAGGCGGAACCACCCAGGAGAAGTACCGACGACTGCTGCCATTTGATCTGCTCTCTTCTGCAGCAGAAGCCTGAGTGTCGACCTGATCTGGAAAGGATCATTTACCACCAATGGTTTTAGGTACCGAGCCATGAGCTAGAAACTATTTAAGATGTATTTTGAACATCTCACCTGTTCTAAGTTTAATGAATTTAGGCAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412821 lncRNA downstream 267 594233 ~ 594447 (-) True G362003
TU412795 lncRNA downstream 1135 593029 ~ 593579 (-) True G361977
TU412817 lncRNA downstream 9880 584568 ~ 584834 (-) True G361999
TU412816 lncRNA downstream 12199 582016 ~ 582515 (-) True G361998
TU412813 lncRNA downstream 25744 568743 ~ 568970 (-) True G361995
TU412874 lncRNA upstream 68788 674142 ~ 678763 (-) True G362045
TU412896 lncRNA upstream 102299 707653 ~ 707954 (-) True G362064
TU412917 lncRNA upstream 180831 786185 ~ 786509 (-) True G362082
TU412933 lncRNA upstream 231482 836836 ~ 837043 (-) True G362098
TU412948 lncRNA upstream 268066 873420 ~ 873714 (-) True G362111
CI01000154_00563885_00564103.mRNA mRNA downstream 30611 563521 ~ 564103 (-) True CI01000154_00563885_00564103
CI01000154_00028488_00030445.mRNA mRNA downstream 564269 28370 ~ 30445 (-) True CI01000154_00028488_00030445
CI01000154_00744348_00748552.mRNA mRNA upstream 138921 744275 ~ 748552 (-) True CI01000154_00744348_00748552
CI01000154_00756309_00761576.mRNA mRNA upstream 150475 755829 ~ 762316 (-) True CI01000154_00756309_00761576
CI01000154_00797516_00828865.mRNA mRNA upstream 192047 797401 ~ 828865 (-) True CI01000154_00797516_00828865
CI01000154_00847380_00859545.mRNA mRNA upstream 241428 846782 ~ 861632 (-) True CI01000154_00847380_00859545
CI01000154_00864988_00870719.mRNA mRNA upstream 259614 864968 ~ 871344 (-) True CI01000154_00864988_00870719
TU413215 other upstream 926363 1531717 ~ 1549871 (-) False CI01000154_01524327_01555571

Expression Profile