RNA id: CI01000154_01576353_01594017.mRNA


Basic Information

Item Value
RNA id CI01000154_01576353_01594017.mRNA
length 1928
RNA type mRNA
GC content 0.43
exon number 6
gene id CI01000154_01576353_01594017
representative True

Chromosome Information

Item Value
chromosome id CI01000154
NCBI id null
chromosome length 1600967
location 1576294 ~ 1594017 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTGCCACATCCCAGTGTTCTGCTGGATCTCAGCCGCTGTTCTAGAGAAGATGATGAGTGAAGCAGAGAGTGGAGAGATTCCCAAGACTCTCACTCAAATGTACACACACTTCCTGATCCTTCAGACTGACATCAAACATGAGAAGGACTATGAGAAGAACGTGACAGATGAAGACATGATCCTCAAACTGGGGAAAGTGGCTTTTCAGCAGCTTGTGAAAGGCAATGTGATCTTCTATGAGGAAGACCTGAGAGAGTGTGGCATTGATGTGACAGAAGCATCAGTGTACTCAGGATTGTGCACTCAGATCTTCAGAGAGGAGTTTGGCTGGTATCAGGGGAAAGTCTTCTGCTTTGTTCATCTGAGCATTCAGGAACATCTAGCGGCTCTATATGTGCACCTCTCCTTCACAAACAACAACATAAATGTGTTTGACCCAATCACCAAACAGAGTTTGTGGTCTAAAGTTAAGGACTGGTTTCAACACATGTTTAAACTTGTTTCATTATCTGAGCTGCATCAGAGGGCTGTGGATGAGGCTCTACAGAGTAAAAATGGACATCTGGACCTTTTCCTGCAGTTTCTTCTGGGTCTGTCAGTGGAGTCTCATCAGATTCTCCTACAAGGACTAATGAAACAGACAAAAAGCAAATCTGACAGCAATGAGGAGACAGTTGAGTACATCAAGATGAAAATCAGGACCATTGACTCTCCAGAGAAATCCATCAATCTGTTCCACTGTCTGAATGAACTGGGTGATCATTCACTAGTGGAGGAAATACAAAAGTATCTGAAATCTGGAAGAATAAAGGAAGCCAAACTCTCTTCATCTCAGTGGTCAGCTGTAGCTTTTGTGTTGATGACATCAGAGAAGAAGCTGGATGAGTTTGATCTCACAAAGTTTATTCTAAGAAACAATAAAGCTGAAAATATGAAAGTTTTTCAGAAGCTGCTGCCTGTGATTAAAGAATCCAGATCAGTTCAGTTGAGAGATTGTGGCATCACAGATGAAGGTTGTGCTGCTCTGACTTCAGCTCTGAGATCAAACCCCTCATACCTGAGAGATCTGGATCTGTCTGGGAATAAACTAGGAAAATCAGTGAATCTGCTGTCTGATGTACTACAGGATCCTCACTGTAAACTGGAGAAACTGTGGTTGTATGATTCTGGAGTCACAGATGAAGGTTGTGCTGCTCTGACTTCAGCTCTGAGATCAAACCCCTCACACCTGAGAGAACTGAATCTGTCATGGAATAAACTAGGAAAATCAGTGAATCTGCTGTCTGATGTACTACAGGATCCTCACTGTAAACTGGAGATACTGTGGTTGGGTGATTGTGGTGTCACAGATGAAGGTTGTGCTGCTCTGGCTTCAGCTCTGAGATCAAACCCCTCACACCTGAGACAACTGAGTCTGTCATTGAATAAACTAGGAAAATCAGTGAATCTGCTGTCTGATGTACTACAGGATCCTCACTGTAAACTGGAGAGACTGTGGTTGGGTGATTGTGGAGTCACAGATGAAGGTTGTGCTGCTCTGGCTTCAGCTCTGAGATCAAACCCCTCACACCTGAGAGAACTGGATCTGTCTAAGAATAAAATAGGAAAATCAGTGAATCTGCTGTCTGATGTACTACAGGATCCTCACTGTAAACTGGAGATACTGCAGTTGAGTGATTGTGGTCTCACAGATGAAGGTTGTGCTGCTCTGGCTTCAGCTCTGAGATCAAACCCCTCACACCTGAGAGAACTGAGTCTGACTGGGAATAATCTAGAACAATATGAAGTGAAGTTGCTCTCTGATCTGAAGGATGATCCACATTATAACCTGAAGGAACTAAAATATTGTGAGTATATTTTTATTTAAAGCTTTTAAATTGTCCCAAGTTCAGTAACAGCCTCATATGTGTGTAACTGGAGAATATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU413219 lncRNA downstream 29836 1541133 ~ 1541411 (-) True G362356
TU413097 lncRNA downstream 73397 1499887 ~ 1502897 (-) True G362252
TU413111 lncRNA downstream 85365 1442581 ~ 1490929 (-) True G362266
TU413112 lncRNA downstream 202321 1373677 ~ 1373973 (-) True G362267
TU413110 lncRNA downstream 230140 1345275 ~ 1346154 (-) True G362265
CI01000154_01524327_01555571.mRNA mRNA downstream 20647 1524267 ~ 1555647 (-) False CI01000154_01524327_01555571
CI01000154_01505317_01513821.mRNA mRNA downstream 62311 1505105 ~ 1513983 (-) True CI01000154_01505317_01513821
CI01000154_01465090_01466925.mRNA mRNA downstream 109188 1464632 ~ 1467106 (-) True CI01000154_01465090_01466925
CI01000154_01422783_01434121.mRNA mRNA downstream 142173 1421764 ~ 1434121 (-) True CI01000154_01422783_01434121
CI01000154_01411672_01413992.mRNA mRNA downstream 160836 1410982 ~ 1415458 (-) True CI01000154_01411672_01413992
CI01000154_01599881_01600510.mRNA mRNA upstream 5522 1599539 ~ 1600510 (-) True CI01000154_01599881_01600510
TU413215 other downstream 26423 1531717 ~ 1549871 (-) False CI01000154_01524327_01555571

Expression Profile