RNA id: TU412288


Basic Information

Item Value
RNA id TU412288
length 280
lncRNA type intronic
GC content 0.36
exon number 1
gene id G361519
representative True

Chromosome Information

Item Value
chromosome id CI01000154
NCBI id null
chromosome length 1600967
location 204214 ~ 204493 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCTAATCCTGGATTAGTCTAAAGGCCTGTTCATGCCAAAAACATTAACTATAAAAATCATGATAAAGATATTGTTCTAAAAATCTGCCTAAATAAGAATAGCAGAGTACCACAGCTATAACAATAACGATATAGAGAAACGATATCGTTGGGATCACTTTCAGAATGACTTTTTTTCCAGCTGTTGAACGATAAAACACTGACAGCCAATCAGAATCCATTCTAATTTAAGGGCTCACGCATTTAAAATGGCAGACGACATTGTGGAAAAGTTCATCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412269 lncRNA downstream 72772 131242 ~ 131442 (-) True G361500
TU412257 lncRNA downstream 153547 50241 ~ 50667 (-) True G361488
TU412686 lncRNA upstream 94218 298711 ~ 299135 (-) True G361873
TU412687 lncRNA upstream 94703 299196 ~ 299418 (-) True G361874
TU412704 lncRNA upstream 109468 313961 ~ 318235 (-) True G361890
TU412730 lncRNA upstream 172219 376712 ~ 391644 (-) True G361915
TU412700 lncRNA upstream 174356 378849 ~ 383066 (-) True G361887
CI01000154_00028488_00030445.mRNA mRNA downstream 173769 28370 ~ 30445 (-) True CI01000154_00028488_00030445
CI01000154_00563885_00564103.mRNA mRNA upstream 359028 563521 ~ 564103 (-) True CI01000154_00563885_00564103
CI01000154_00594797_00604722.mRNA mRNA upstream 390221 594714 ~ 605354 (-) True CI01000154_00594797_00604722
CI01000154_00744348_00748552.mRNA mRNA upstream 539782 744275 ~ 748552 (-) True CI01000154_00744348_00748552
CI01000154_00756309_00761576.mRNA mRNA upstream 551336 755829 ~ 762316 (-) True CI01000154_00756309_00761576
CI01000154_00797516_00828865.mRNA mRNA upstream 592908 797401 ~ 828865 (-) True CI01000154_00797516_00828865
TU413215 other upstream 1327224 1531717 ~ 1549871 (-) False CI01000154_01524327_01555571

Expression Profile