RNA id: TU412700


Basic Information

Item Value
RNA id TU412700
length 570
lncRNA type antisense_over
GC content 0.57
exon number 2
gene id G361887
representative True

Chromosome Information

Item Value
chromosome id CI01000154
NCBI id null
chromosome length 1600967
location 378849 ~ 383066 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTCTGTATTTTCATGCTCGGTGTCAGTAAGGGTGAGGTTAGAGTTGGCTCTGCTGGAAAGGCAGGAGCTGCGGCCGGATTTGGTGTTGCTACGGCCCCAGAGTCGGACAGCGTGCTCGGGGGACACAATGCCGTCCGTTTCTGTGTCAGCGTCTGATCCCACACTCACGGAGTAGTCGCGGTGGGGAAGGCCCATTTCTGTCCGATATGCTACCATATGGGGCGGCACGGGATCTCCGAAGGCCATGTCTCTGAGAGAGAAGTCCGCCCCTTGTCTGCTGAACTCATCGGCTTCGTGGTGCACCACGTCTTTGACTCGGCTGCCATAGGCCAATCTGGAGTCCTGATCAAAAGCTTTGAGGGTCTCGCTGGAGCTGTAGGACTTGGGGTTGAGCTTGCCGTCCTCGCTGTCAGCTGAGGAGCTGGTGTACCGGCGCTCCGCGTCCCGCCTGGAGGTCAGAGAGCGGTAGGGTCTGCGTTCTTTCACTTCCATGGCAACCTTGTCTCTTGTCTCAACATCAAAGGGAGGGAAAGAAGCCAGTTCAGTCCGTGTGATTCTACAAGAAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412704 lncRNA downstream 60614 313961 ~ 318235 (-) True G361890
TU412687 lncRNA downstream 79431 299196 ~ 299418 (-) True G361874
TU412686 lncRNA downstream 79714 298711 ~ 299135 (-) True G361873
TU412288 lncRNA downstream 174356 204214 ~ 204493 (-) True G361519
TU412269 lncRNA downstream 247407 131242 ~ 131442 (-) True G361500
TU412786 lncRNA upstream 123705 506771 ~ 517031 (-) True G361969
TU412800 lncRNA upstream 159096 542162 ~ 553163 (-) True G361982
TU412813 lncRNA upstream 185677 568743 ~ 568970 (-) True G361995
TU412816 lncRNA upstream 198950 582016 ~ 582515 (-) True G361998
TU412817 lncRNA upstream 201502 584568 ~ 584834 (-) True G361999
CI01000154_00028488_00030445.mRNA mRNA downstream 348404 28370 ~ 30445 (-) True CI01000154_00028488_00030445
CI01000154_00563885_00564103.mRNA mRNA upstream 180455 563521 ~ 564103 (-) True CI01000154_00563885_00564103
CI01000154_00594797_00604722.mRNA mRNA upstream 211648 594714 ~ 605354 (-) True CI01000154_00594797_00604722
CI01000154_00744348_00748552.mRNA mRNA upstream 361209 744275 ~ 748552 (-) True CI01000154_00744348_00748552
CI01000154_00756309_00761576.mRNA mRNA upstream 372763 755829 ~ 762316 (-) True CI01000154_00756309_00761576
CI01000154_00797516_00828865.mRNA mRNA upstream 414335 797401 ~ 828865 (-) True CI01000154_00797516_00828865
TU413215 other upstream 1148651 1531717 ~ 1549871 (-) False CI01000154_01524327_01555571

Expression Profile