RNA id: TU412800


Basic Information

Item Value
RNA id TU412800
length 2809
lncRNA type antisense_over
GC content 0.46
exon number 3
gene id G361982
representative True

Chromosome Information

Item Value
chromosome id CI01000154
NCBI id null
chromosome length 1600967
location 542162 ~ 553163 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCACAAGCAGTGTTTGTGGAGGCAAGAACACCCCAAGCTGGGGCTGGGACGAAAGCCTGAAAAATAATCACTCTAGTGCAAGGAGGATTCTTGGCACCATGCGCTTATGGTGTTTTAGATTGTTGAAGGTAAAATGTAACAGTGAAGTTATTTACAGGCTATTAAATAATTCTCCCAGCCTTCAGCCCGAGATGCTGGGATAGGCTCCAACATCCCTGAGACCCTAAACAGGACAAATGATTTGGATGGACGGATGCATTAAATAACGTGTGTTTCAACAAAACATTTATAAAAAATGATGTGTTTACCTGTCATATAGCACTTGGTTTCTTGGGTGTTGCTCAGGGGGTTGTTGTTCTTAAACATGTAGAGGTTGAAGGGCACAATGTTGTTGCTGTTGAGTCGCTTCCAAACATCAATGTCAGGAATGGTCCATCTGCCTGCAAGGACATCGTAATCTCTGCGGCCCATGTGGACAAGCTTTGTAAGGGGCTCATAAAGGCCACCCTGATAGCCTATTACTAGTTGGAAACTTGGGTTGGAGTCCAAATACACCTCCCCAAAAGCTGTGTGCAAGATCTGTTTGATCATGAGACCGGCACCACTGAATACAGCCAATGGTGTACCAATGTTGTCGCAGGCCACGTAGAACTCATCCCCACTGCTCAACTCCATGGCAAATAGGTGGCCTTGAAGGTCATAGTAGAGCGAGGTGATCTCTGAACTTGAGTGATTGTACATGTGCGTAACTCTGGTCGGACTGGACAAGTCTGCGTAGAAGAATTGCAGATGGTGGCCTTGGCTACTTCGACTGGACACTCTCCTGCCCAAGCCATCATAGCGGTACTTGATGGTCCATCCGTTAACTTTGTTGTAGGCTTTAACAAGCAACCCAGCAGAGTTATACTCAAAGAAATCATTGCCTCTCTGCCTGAGGAATCCATCCTCGTCCAACCGGTACTGAACGTCACCAAGTCGAGTAATGCGGTCCCGAATGTCGTAGCGTAGCGGTGTAAGTCTGGCACTATTACCGGGACTAAGGAGGTGCAAATTTCCATTCAGATCATAGCTGTAACGCCAGAGAGGCTTGTCGTTGATGGACACCACCTGGAGTTGGCCATCAGCATCGTACTCGTAGGCGTAACGGGTGGTATTTGCATAGGGCCCGACTTTAAGCTCCTTCGCCACCACTCGCCCCATGTTGTCGTACTGTACCATCATCCAATACATCAGCGAACGGAAAATCTCATACTGCACCTCTTTAACTCGTCCATAGGCATCAAAGTGTTTGGTGTGGGTCATGACAGATGTGGTGATGATCTGGTTAATATCATAGTAGATGACTCCAAACTTGCCAAACTGCTCCGTTTTGCCTGAGACATCATCGTAGCGATAGAGGTCAATGGGCAAGGGCGTTTCATTGATGACTGCTTGCATGCTGGTGACCCGGAAGCTGTTGTCGTAGTTGTAGTCGAACCGGGCGTTCACCATGCCCTCCTCGCTGAAACGAAAGATCTGTCTGTCGATGAGCGGTCCGATCTGCCTGTAGCGTATGGTACAAGCAAAGCCATCGCTTTGAAGCCCCACGGTTTTCAACATGCCTGCAGATTCATCGTAAGAAAAGGCAATCCGTGTCGTATCGTAAAGGATTTCTAGCAGACGGGAGAGTTTCCCATACTTATAGATGACTCTACGCCCCGTTCCTTGGTGGATGGTTTGCAGAAGCAGTCCGTCTTCGCTGTAATCTTGCAAAACTGTGGCATTGCCCTCAGGTGGTCTGTATGTGTTTCTGTAATAGCCAATGGAACGGGTGGTCTCCAGAGTCTGTCTGGCCACATTGGGCATGGTTACTGAAGAGAGGCGGTCGTTCTTGTCAAACTCGAAGATGTATTGCCGCTGGCTGTATAGCAGCAGGACCATGGATTTTTCAAGGTATGTGTAGCTCCATGATTTTCCATCTGCAAATATCTTTGAGGTGATTCTCCCATTTTGGTCATATTCCATTCGGACCGACATAGTGCCCCTCTGGATGCCGGCGATGTGGCCGCCAGGTGAGTAAGTGACATTGACACCGTTTAGGCGACTACTTGGAGCCCACAATGTAGGTCTTCCGGCATGGTCATAGTGGATCCTTAAGGTGAACTTCCTGTGGTCATCATAGACTTTCTCGGTCCTGGTTACGCGGTCAAAATCCATGGATAACAAGTTTCTGTTATGAACCCTGAGTCTGCGTCCGTATACTGTGACCTGTCCTCGTGCTTGTTCTTTGCGTTGTCTCCATTCCACTAGGTTGAGTCCATTGTCGATGGGCAGAGTGACATTTCTCTTGCTTATGGTTGGGTTGACTGTTCCTGACAGCAGGTGAGGCTCCGTGTGAAGAGACACTTCCATGCCGTTGGCCAATACCAGACGCAAGGAGCCATCCAGACCAATGTAGTAACTGTTTTTGACTTGATCTGCAATTTGAAGACAAAAAATAGTCTCATGTATATTGCAAAAACATTGTGAGAATTGCTATTCGAAATTCTGTTAGAGGAGATCACTTATATATGAAAAATCTGTCATCATTTACTAACCCTGGCAGATTAAAGCATAGTTCATAGCGATAGTTCAACCCAAAATGAAAATTGTCATAATTTACATAATTGACTTCCATTGTATTTTATTTTTTTTTACTACTCTGGAAGTCAATAGCTACTGTAAACTGTTTGATTACCAACATTCTTCAAAATATCTTTTGTGTTCAACAGAAGAAAGAAACTCATACAGGTTTAGAAAAACTTGAGGGTCAAAGTAATGACAAAATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412786 lncRNA downstream 25131 506771 ~ 517031 (-) True G361969
TU412730 lncRNA downstream 150518 376712 ~ 391644 (-) True G361915
TU412700 lncRNA downstream 159096 378849 ~ 383066 (-) True G361887
TU412704 lncRNA downstream 223927 313961 ~ 318235 (-) True G361890
TU412687 lncRNA downstream 242744 299196 ~ 299418 (-) True G361874
TU412813 lncRNA upstream 15580 568743 ~ 568970 (-) True G361995
TU412816 lncRNA upstream 28853 582016 ~ 582515 (-) True G361998
TU412817 lncRNA upstream 31405 584568 ~ 584834 (-) True G361999
TU412795 lncRNA upstream 39866 593029 ~ 593579 (-) True G361977
TU412821 lncRNA upstream 41070 594233 ~ 594447 (-) True G362003
CI01000154_00028488_00030445.mRNA mRNA downstream 511717 28370 ~ 30445 (-) True CI01000154_00028488_00030445
CI01000154_00563885_00564103.mRNA mRNA upstream 10358 563521 ~ 564103 (-) True CI01000154_00563885_00564103
CI01000154_00594797_00604722.mRNA mRNA upstream 41551 594714 ~ 605354 (-) True CI01000154_00594797_00604722
CI01000154_00744348_00748552.mRNA mRNA upstream 191112 744275 ~ 748552 (-) True CI01000154_00744348_00748552
CI01000154_00756309_00761576.mRNA mRNA upstream 202666 755829 ~ 762316 (-) True CI01000154_00756309_00761576
CI01000154_00797516_00828865.mRNA mRNA upstream 244238 797401 ~ 828865 (-) True CI01000154_00797516_00828865
TU413215 other upstream 978554 1531717 ~ 1549871 (-) False CI01000154_01524327_01555571

Expression Profile