RNA id: TU412896


Basic Information

Item Value
RNA id TU412896
length 302
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G362064
representative True

Chromosome Information

Item Value
chromosome id CI01000154
NCBI id null
chromosome length 1600967
location 707653 ~ 707954 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAATAATGAGCGCCTCCTCCGCCATGTTGCCGTCAAATAAAACAGTTGTCATGCCAACTTTCTACTGTAAACAGAAGCTCGCAACGCTTGCCCCGCCTCCGAGTTCTTCTGATTGGTCCACTGTTTTGGAACTGACATTGATGAGCGGCGCTGCGTGTAAAAGTTGAAATTCTTTTAACTTGACACAGCATCTTAAAAATGCGGTGCTCATGTGCGAGGCGCTGCAAAAGATGCGAGACGCGAGCGTGACAGTCATGCACGTCCGTCAAGCACGTGTTTACATAGAACAATGGAAAAGTAGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412874 lncRNA downstream 28890 674142 ~ 678763 (-) True G362045
TU412821 lncRNA downstream 113206 594233 ~ 594447 (-) True G362003
TU412795 lncRNA downstream 114074 593029 ~ 593579 (-) True G361977
TU412817 lncRNA downstream 122819 584568 ~ 584834 (-) True G361999
TU412816 lncRNA downstream 125138 582016 ~ 582515 (-) True G361998
TU412917 lncRNA upstream 78231 786185 ~ 786509 (-) True G362082
TU412933 lncRNA upstream 128882 836836 ~ 837043 (-) True G362098
TU412948 lncRNA upstream 165466 873420 ~ 873714 (-) True G362111
TU412953 lncRNA upstream 170740 878694 ~ 878901 (-) True G362116
TU412954 lncRNA upstream 171187 879141 ~ 879413 (-) True G362117
CI01000154_00594797_00604722.mRNA mRNA downstream 102299 594714 ~ 605354 (-) True CI01000154_00594797_00604722
CI01000154_00563885_00564103.mRNA mRNA downstream 143550 563521 ~ 564103 (-) True CI01000154_00563885_00564103
CI01000154_00028488_00030445.mRNA mRNA downstream 677208 28370 ~ 30445 (-) True CI01000154_00028488_00030445
CI01000154_00744348_00748552.mRNA mRNA upstream 36321 744275 ~ 748552 (-) True CI01000154_00744348_00748552
CI01000154_00756309_00761576.mRNA mRNA upstream 47875 755829 ~ 762316 (-) True CI01000154_00756309_00761576
CI01000154_00797516_00828865.mRNA mRNA upstream 89447 797401 ~ 828865 (-) True CI01000154_00797516_00828865
CI01000154_00847380_00859545.mRNA mRNA upstream 138828 846782 ~ 861632 (-) True CI01000154_00847380_00859545
CI01000154_00864988_00870719.mRNA mRNA upstream 157014 864968 ~ 871344 (-) True CI01000154_00864988_00870719
TU413215 other upstream 823763 1531717 ~ 1549871 (-) False CI01000154_01524327_01555571

Expression Profile