RNA id: TU413116


Basic Information

Item Value
RNA id TU413116
length 1376
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G362271
representative True

Chromosome Information

Item Value
chromosome id CI01000154
NCBI id null
chromosome length 1600967
location 1276333 ~ 1277708 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAATAAATCAACTTTTTGATGATATTCTAATTATATGACCAGCACCTGTATAAGAGTCAAAAAAACATGCACAGACAAATCCAAATTAAACCCTGCGGCTCGTGACGACACATTGATGTCCTAAGACATCAGACATCATTTGTGTTCTACTGAAGAAACAAAGTCACCTACATCTTGGATTCCCTGGGGGTAAGCAGATAAACATCAAATTTTCATTTTTGGGTGAACTATCCCTTTCAGTGTGTTTGTGAAGAAACTACCAGGTAGCTCTTTACTCTTTCTGGTTTTTCTGCTTTTCTCTGAAATCAAGCCCTACATCTGTTGAATATTAAAAAGTACTGAAAGTACTGCCAGAGTTTATCACGACAAGATCTGAAATCATTTATTAAGGTTTTGTTTTAACTTGTCAGATGTTGAGTTTACTGAAAGAGTCTGTCACCTTGTTTCCTCCAAAAACAGTAGTGTTGTATAGTATAGTAATGAAAGGTATTAAAATATAAATGCTGCTTTCCAGTGTCCTTATGATGAACATGATAATCATTAAACTGATGTTTGCTCTTGCATCAGTTTTATGACTCGGTTGCAGCTCTTGGCCCAGTGTTTCCTCCTCATGCATGATTGGCATCTCAAGGAAAATTACCTAGCAACCAGAAATGTTCAGTCCAGACAAGTATATGTGTGTTAAGGCTTTAAGGGAAGCATGAAGTGCTCATTGTTTTGCCACTATAGTATTACCCAACAGTAAAGCATTACAATTTTCTTGCTTTAAACCAAAAATGATTTATTTAGTTATTAAGCCATTAGTTATTACCCCCTCACATTCATTCCAGTTCCTCTGCTGTCTTTAGATGACCCGTCTCATCTCAGCATGTGGACAGAACGTGCAGTTACTCAGCAAAACCCTCTTGTTCTCATGGGAACACGTTCCCGCCCTCTTAACCCCATTTCAATGACCATAACAGCACGAAACGTTGTGGAATCAGTCGTGAATTGCCTTTTATGCTTTGTAAGTGATACTATTGTACTGTTTTTGGAATGTATATTATTTCATAATGCCTACACCCTCTGAATGCTGGATTATTTTTCCATGTCTGGGAACCAGGGAGCTGGTATGAGACTTCACATTGTTTTCATGAGCTCGTTCTGAAACTGCTGAGTACAGCAGGGTCACGGAGGAGGAAGTTGGTGTGATGCAAAATGGGGTGATGTTCTGCTCAGGCCATAATATGAATAAATTTGGGTGGTTCCTCATTTAAATAATGAAAATCCCACAAAAAACGTGTTGCGCATATATATATCGCATTAATTTAAATCAATTAATCACATATCGCAACATACTAGTAAAGTAACGCATTAATCGCAAACATACACAGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU413095 lncRNA downstream 28169 1247256 ~ 1248164 (-) True G362250
TU413133 lncRNA downstream 106249 1165454 ~ 1170084 (-) False G362287
TU413132 lncRNA downstream 106249 1168215 ~ 1170084 (-) True G362287
TU413059 lncRNA downstream 188120 1087941 ~ 1088213 (-) True G362218
TU412994 lncRNA downstream 215583 996453 ~ 1060750 (-) True G362153
TU413102 lncRNA upstream 11309 1289017 ~ 1289723 (-) True G362257
TU413169 lncRNA upstream 25175 1302883 ~ 1303201 (-) True G362317
TU413179 lncRNA upstream 43964 1321672 ~ 1321978 (-) True G362324
TU413110 lncRNA upstream 62292 1345275 ~ 1346154 (-) True G362265
TU413112 lncRNA upstream 95969 1373677 ~ 1373973 (-) True G362267
CI01000154_01267269_01269079.mRNA mRNA downstream 7254 1266175 ~ 1269079 (-) True CI01000154_01267269_01269079
CI01000154_01213994_01216752.mRNA mRNA downstream 59581 1213084 ~ 1216752 (-) True CI01000154_01213994_01216752
CI01000154_00982864_00992761.mRNA mRNA downstream 282805 981863 ~ 993528 (-) True CI01000154_00982864_00992761
CI01000154_00864988_00870719.mRNA mRNA downstream 404989 864968 ~ 871344 (-) True CI01000154_00864988_00870719
CI01000154_00847380_00859545.mRNA mRNA downstream 414701 846782 ~ 861632 (-) True CI01000154_00847380_00859545
CI01000154_01303717_01309218.mRNA mRNA upstream 25731 1303439 ~ 1309285 (-) True CI01000154_01303717_01309218
CI01000154_01316706_01317237.mRNA mRNA upstream 38973 1316681 ~ 1317421 (-) True CI01000154_01316706_01317237
CI01000154_01338824_01343731.mRNA mRNA upstream 61028 1338736 ~ 1343884 (-) False CI01000154_01338824_01343731
CI01000154_01350180_01372314.mRNA mRNA upstream 72245 1349953 ~ 1372314 (-) True CI01000154_01350180_01372314
CI01000154_01374595_01375245.mRNA mRNA upstream 96753 1374461 ~ 1376830 (-) True CI01000154_01374595_01375245
TU413215 other upstream 254009 1531717 ~ 1549871 (-) False CI01000154_01524327_01555571

Expression Profile