RNA id: TU413179


Basic Information

Item Value
RNA id TU413179
length 307
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G362324
representative True

Chromosome Information

Item Value
chromosome id CI01000154
NCBI id null
chromosome length 1600967
location 1321672 ~ 1321978 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTCGACATAATATTCACATATGCAGTTGATAGGGGACATACATACATAGCAGTTACAGCATGAAATAATATTTAAACCTATAATATTTTACATACAGTGCACAGCATAAATGAGTACACCCCCTCTGAAACTTCTGAAAGTCAGCAATTACTCAATTACTTAGAAGACATGTTAGGGTTCTTTAGAGATATAATGTTCCAGCAAGTCTGCTTCATCAATTACCAAAGAAGCATGTCAAAATTATTCGGGAAAATAAGATTTTCTTATCAAGGTGATAAAATGTTGTGTAGCAAAAATGAGTACACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU413169 lncRNA downstream 18471 1302883 ~ 1303201 (-) True G362317
TU413102 lncRNA downstream 31949 1289017 ~ 1289723 (-) True G362257
TU413116 lncRNA downstream 43964 1276333 ~ 1277708 (-) True G362271
TU413095 lncRNA downstream 73508 1247256 ~ 1248164 (-) True G362250
TU413133 lncRNA downstream 151588 1165454 ~ 1170084 (-) False G362287
TU413110 lncRNA upstream 18022 1345275 ~ 1346154 (-) True G362265
TU413112 lncRNA upstream 51699 1373677 ~ 1373973 (-) True G362267
TU413111 lncRNA upstream 120603 1442581 ~ 1490929 (-) True G362266
TU413097 lncRNA upstream 177909 1499887 ~ 1502897 (-) True G362252
TU413221 lncRNA upstream 205932 1527910 ~ 1587270 (-) True G362358
CI01000154_01316706_01317237.mRNA mRNA downstream 4251 1316681 ~ 1317421 (-) True CI01000154_01316706_01317237
CI01000154_01303717_01309218.mRNA mRNA downstream 12387 1303439 ~ 1309285 (-) True CI01000154_01303717_01309218
CI01000154_01267269_01269079.mRNA mRNA downstream 52593 1266175 ~ 1269079 (-) True CI01000154_01267269_01269079
CI01000154_01213994_01216752.mRNA mRNA downstream 104920 1213084 ~ 1216752 (-) True CI01000154_01213994_01216752
CI01000154_00982864_00992761.mRNA mRNA downstream 328144 981863 ~ 993528 (-) True CI01000154_00982864_00992761
CI01000154_01338824_01343731.mRNA mRNA upstream 16758 1338736 ~ 1343884 (-) False CI01000154_01338824_01343731
CI01000154_01350180_01372314.mRNA mRNA upstream 27975 1349953 ~ 1372314 (-) True CI01000154_01350180_01372314
CI01000154_01374595_01375245.mRNA mRNA upstream 52483 1374461 ~ 1376830 (-) True CI01000154_01374595_01375245
CI01000154_01383482_01395024.mRNA mRNA upstream 60809 1382787 ~ 1395540 (-) True CI01000154_01383482_01395024
CI01000154_01411672_01413992.mRNA mRNA upstream 89004 1410982 ~ 1415458 (-) True CI01000154_01411672_01413992
TU413215 other upstream 209739 1531717 ~ 1549871 (-) False CI01000154_01524327_01555571

Expression Profile