RNA id: TU413097


Basic Information

Item Value
RNA id TU413097
length 2989
lncRNA type antisense_over
GC content 0.35
exon number 2
gene id G362252
representative True

Chromosome Information

Item Value
chromosome id CI01000154
NCBI id null
chromosome length 1600967
location 1499887 ~ 1502897 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTACATTACATTTAAAGCAGTTAGCTATTAATATTTTGTTATTTTATGTCATGGCAATGTAATATATAGCAATACATTGTTAAGATGAAAATTAAACCTCAGTATGCCAATAAATTAAATACTTTTTTACAAAGAAAAGTTTACAAAGAAAAGGTTCATCTCATTTTATTATTTATTTATATGTTTACAACATTTATGGAACTTTTTTGGAAGTTGCTTTGCGACCATAAATAACGTACAGTTGCAACAGATTTAAAAGCTAACAAACATCCAAGTGGGCAAATCATTATCCTATTTCAATGTGTATTGTAATTAATTATAAAAATATGTATATATTGTTTGCTGTCAGAATAGAAAAGATGTTACCACAAACTACTCATCAAAACAAATCATCATCAGGTACTCATGTAAACAGCAATTTTCATTAAACTTTCTGGTGTTTATCTTGGGAAGCAGAAACAAGAGGTCAGCTTGCCCTGTGGGCTGCATACCAAACCATTCCCTAACCACACACAAACATACACACAGTTGAAATCTCTTTATTTCCTGTGCCCTTCAAACATCCATGAAAATTATCCATGTGCCTCTCTTCCCAATGCTGGGAACTCAAATCAGTTATGAAGGCAGGGTTTTAGCTCTCAAATGCTTTACCCCTTCATTCTCAGTCTTTCACTTCCTCACTTGCTATCATTGCCCCTTTAAGGGGGTTGACTCTTGTACTTTAAATGGTCTCATTCTTCCTTCACTCCTCAGGATTAAGGCTACAACGATGTCGGAACTCTTGTCCATACTCATGAACCCACTTATTGGCAACTGGAAAAGAAAAGACAGTGAATGCCTTTATTTGGTGTGTTCCTCACAGAAAGCATGTGGCTTTAAAAGCCTTGATATAGTACATATAAGGGCATCCCTAGTAAATAATATCCCATAAAAGCTCCATTAACCATTCCCACTTCACTGAAGGTTCAGATTTTTCCTTTCACTTTTTTTTCTTGCTTCTTTTACAGAATTACTACCTACTGTTGGAGCATTCCTGTAGCTCAAACAGTAGTGTGTGTGTGTGTGTGGTGCCAGCAAAACCAAAGTCATAGGTTCAATTACCAGGGAATGAATTAAATATATATCTTGAATTGCTTTATATATGACTGTCTTTCAAATTAAGTTCTTTCCTTATGTTGGTAAACAAGACACCATGTGATGCAACAATCATACCCCATTTATCGCCAACAATGACAGGGCAGCCAGCATGAAGAGTGTCACCATTTCCTTGACCATTTCTATGAAGATTCCACCAGAAGAGAGCACCATTCTAGAAAGAAAACACAAAAAAGTGAAATACACTCCTTACAGAGAATAAAGAAAACTCCCAATATAGTTATATTATGTTTATTTAGTCTAAAAACGTCTTTGACAGTGTACACAATAGCCAAAATCCTGGATTATGAACCTTATTTAACATATATATTCCTTTTTTCTTTTGCGAGAGGTTGTGCAGAAATGACATCCCCCTTAGTGGGTGGAGGTGAAAGTGCAAATTTCTAGATAGCCTTCTCTCAGGTTTCACCAACAGTTCATTTACTGAAACAACACTGACTCCCAAACCCAAAGCTTTTGTTGTAACGGGATACCCAACGAAATGTCTGACCTCAACAGAAAACAATCTGTTATTACTCAGCATTGAAGGACATAGGATTCTGAAAGTTGTGCAGAGTGAAGTGTGGTTGTGTTCTGTCTTAAATGAATCTGTGAGACTAATGTATGTAATTCTGTACCTCCACTACAGGAACACTGAAGTTGGCATATATAAAGGCTGTGAATCCTCCTGCTTCCACAGAGCTCAACTAAAAAGGAAAAAAAGTGGTTTACTCAAGCAGCATTAAATTAATTTTGTTACTGCTAAATGCTTTCAAAACTCACATACTTACTTTATCACTCAAAACTACATTGGCACGATAATGTCTTTTAATCAAGAAAGAAAGCGAGCAAGAGCTGAACTATTTATTCACTTACATATATCATGAAGGTAGCCACTCGATTTCCAGTTTTTAACCTGTACAATGGACTTGAATCAGACTGCCAATTAAAAAAAAACAATTTTAAATATTCTTCTGCTGTAAAAAGTCACATTATACACAATGGGTATGCATCATGGCTTATACTGTATATACAAGATACATTATCCCCCGGTTTCACAGACAAGGCTTAAGCTAGTCCTAGACTAAAATGCATGAGCTGTTGTAACTGAAAGCAACTTGCACTGATATATCTTAAAATATGTCAGTGTCATTGTTTTGTCTCATGATGATAAGTAGAATCACTGAAGGAAAGAGAAACACATGAATTAACAGAGGTTTAGATGTTGATTTTATTGAAAATATCACTATTATGGTGATCAGTGTTTCCTTTAGTTGGGCAGTTTGACTCTTTGCTTTTTATGTCAGTTTGTGGTTTTTGTAATGGTGTTTGCTAATTTTACACATTTTAAATGGTTGACTTTTAAGGAATTCATTTGATTAATTCTAACTCAATTCTTATATGTTGAATTTAATTAATAATATTGCTTGTAAGTAGATAGAGTGTATTACATTTTACAGTGTAGGCTAAGCCCTGTCTGTGAAACCGGGCCTAGAAGTAGTAAATCTCTGCATCAGAAAGCATTTCTTTATTATTTACAAATTTTTGTAAATGTTTTTCCTTAAATGTGTGTAAATGTTTTGGAAAATTCATAATTAAAGAACATTCTTATTACTCACTGTGGCATGATCAAAATGAGGTTCATAGTGTCCTCCAATGCCATAATTTACAACTTGGAGATATTCAGCATAAGGGGGCTGCACATTCAACCCAGTGACCATAGTGATGCGTCGATCCACCTTGCCCACAACTTCATGGGCTGACTCTTTAAGCCATGCACTGGAAGATCATTGACAAAAAAACCTAATATGAGAGCCACTTCACAAACTAAAGCAGTACAGACAGAAAAAAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU413111 lncRNA downstream 8958 1442581 ~ 1490929 (-) True G362266
TU413112 lncRNA downstream 125914 1373677 ~ 1373973 (-) True G362267
TU413110 lncRNA downstream 153733 1345275 ~ 1346154 (-) True G362265
TU413179 lncRNA downstream 177909 1321672 ~ 1321978 (-) True G362324
TU413169 lncRNA downstream 196686 1302883 ~ 1303201 (-) True G362317
TU413221 lncRNA upstream 25013 1527910 ~ 1587270 (-) True G362358
TU413219 lncRNA upstream 38236 1541133 ~ 1541411 (-) True G362356
CI01000154_01465090_01466925.mRNA mRNA downstream 32781 1464632 ~ 1467106 (-) True CI01000154_01465090_01466925
CI01000154_01422783_01434121.mRNA mRNA downstream 65766 1421764 ~ 1434121 (-) True CI01000154_01422783_01434121
CI01000154_01411672_01413992.mRNA mRNA downstream 84429 1410982 ~ 1415458 (-) True CI01000154_01411672_01413992
CI01000154_01383482_01395024.mRNA mRNA downstream 104347 1382787 ~ 1395540 (-) True CI01000154_01383482_01395024
CI01000154_01374595_01375245.mRNA mRNA downstream 123057 1374461 ~ 1376830 (-) True CI01000154_01374595_01375245
CI01000154_01505317_01513821.mRNA mRNA upstream 2208 1505105 ~ 1513983 (-) True CI01000154_01505317_01513821
CI01000154_01524327_01555571.mRNA mRNA upstream 21370 1524267 ~ 1555647 (-) False CI01000154_01524327_01555571
CI01000154_01576353_01594017.mRNA mRNA upstream 73397 1576294 ~ 1594017 (-) True CI01000154_01576353_01594017
CI01000154_01599881_01600510.mRNA mRNA upstream 96642 1599539 ~ 1600510 (-) True CI01000154_01599881_01600510
TU413215 other upstream 28820 1531717 ~ 1549871 (-) False CI01000154_01524327_01555571

Expression Profile