RNA id: CI01000158_01366017_01386733.mRNA


Basic Information

Item Value
RNA id CI01000158_01366017_01386733.mRNA
length 2077
RNA type mRNA
GC content 0.45
exon number 10
gene id CI01000158_01366017_01386733
representative True

Chromosome Information

Item Value
chromosome id CI01000158
NCBI id null
chromosome length 1938735
location 1365460 ~ 1386733 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATCAGGCTGGGAAGAGGAATCTGTGATCGGGCCCTGCCACCCGAACCCATGTCACAACGGAGGGGTGTGTGAACACAGTGAGACATACCGCGGAGACACTTTTGTTGGATATTTGTGCAGATGTCCGCTTGGCTTCAATGGTGTCCACTGCCAACACAATGTTAACGAGTGTGAGAAAAATCCTTGCAAAAATGGAGGCAGCTGCACAGACCTGCGAGCAAACTACACCTGCCAGTGTCCCGGCGAATACATGGGGCGGAACTGTCAGTACAGTGGACGAACCGATGACAGCAATGACCCTAGGGAGGACATCTTAGGCTTCGAGAGTGAAGACAGCATCTCTGTGTGTGAGAGCAAGGACACAACATCCATCGATGAATCCAAGGACGTTGCATCCAAAAGTTCAGACCTGCCAGATGATTTTGAGGACAAAACGGAGAAAAATGCCATTTCCGGGGCCCATACGGAGTCTGTGGCAGGAACCTGCGAGAGCAAAAATGATATTATCATATTACCGTTTGAGACCAAGGAACACTGCATTTGTGAATGTTCTGGACCTTTGGGTATGGAAGGGGGGATCATTTCGAACCAGCAGGTAACAGCTTCCTCCACGCACCGAGCTCTGTTTGGACTGCAGAAGTGGTTTCCGTACTTCGCCCGACTCAACAAGAAGGGCCTCGTCAATGCCTGGAGTGCAGCCGAGGGCGATCGATATCCATGGATTCAGATAAATCTACAGCGGAGGATGAGGGTGACCGGACTGATAACACAGGGTGCCAAGCGAATCGGAAGCCCCGAGTATGTGAAATCATATAAAGTGGCATACAGCGATGACGGAAAGGCCTGGAGCATGTTTAAAGTCAAGGACACAGATGAGGACATGATATTCACAGGAAATACCGATAACAATGCCCCCTCGGCCAACTCCTTCAGCCCACCGATTGAAGCGCAATACATCCGTATTTACCCACAAGTCTGCAGGAAACACTGCACACTGCGAATGGAGCTCCTGGGCTGTGAGCTCACAGGATGCTCAGAGCCCATAGGGATGAAGACCGGACACATCCAGGACTATCAAATAACCTCCTCCAGTGTGTTTCAGACCCTGAACATGGACATGTTCTCCTGGGAACCCTCCAAGGCCAGACTGGACAAACAGGGCAAGGTCAATGCATGGACGTCAGCCCATAACGACCAATCACAGTGGCTGCAGGTGGATTTGCTGATTACAACCAAAATCACAGGAATTATCACCCAAGGAGCCAAAGATTTCGGGCATGTGCAGTTTGTTGGTTCCTTTAAATTGGCGTTCAGTAATGATGGAGAGAGATGGCTCATATATCAGGATGAGAAACAACAGAAGGATAAGATCTTCCAAGGAAACTTTGACAATGAAACGCACAGAAAGAACGTGATAGATCCGCCGATCTACGCCCGATTCATCCGGATTCTTCCGTGGTCGTGGTACGGACGCATCACTATGAGGGCGGAGCTTCTGGGCTGTCCGGAGGAACAGTGAAAGTTTGCCACATTTATGACAGACTGTGTAAAAATAACTTTAAACATTTCTAATGGTGATCTTTCAAGGATGCTGTTGAGACTTGTCTGATTTGAAAATGAAAGATCTTTTGATTACAGTCGATTATGATTGTGATGACTTTGAATGGATTTTTTTTTCTTTTTCCTGAAAATATCACAATGCTTTTCAAATGTTACTGTCACTGTACAAATGACTACTTTTATTTGAGAGTATAAACAGCTGAAGTAGGTCAATTGAATCCACTCAGGTCAAAGGTCACCTGCTAGAATAGTACTTTGAGTTCATGATTTATGAATAATAGAAGGAGGTACTGAGAACTGTTAACATTCTTACAAATTTATGTATATTAACTACTGAATGGTGTTCATTTGTAATTTATTAATATTCAATCAAAGCAAAATCAAAGAATGAATAGTAGGGGAGAGTGGGGTAAACTGTGCCGCTTATCAAGATTTATTTTACACAAACAAAGACTAAAGGTGTGGTCACTTTTACTGTATGGTGAATTTTTGTGGTTGAAAGCTTATTTAAATAAA

Function

GO:

id name namespace
GO:0005178 integrin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU415265 lncRNA downstream 29525 1254047 ~ 1335935 (-) True G364076
TU415133 lncRNA downstream 98877 1261130 ~ 1266583 (-) True G363957
TU415148 lncRNA downstream 151391 1204852 ~ 1214069 (-) True G363972
TU415209 lncRNA downstream 322204 1043002 ~ 1043256 (-) True G364030
TU415139 lncRNA downstream 369379 995019 ~ 996081 (-) True G363963
TU415313 lncRNA upstream 39290 1426023 ~ 1447805 (-) True G364112
TU415300 lncRNA upstream 65524 1452257 ~ 1452976 (-) False G364103
TU415402 lncRNA upstream 279197 1665930 ~ 1666140 (-) True G364200
TU415309 lncRNA upstream 282657 1669390 ~ 1671108 (-) False G364109
TU415310 lncRNA upstream 282699 1669432 ~ 1671108 (-) False G364109
CI01000158_01341073_01343685.mRNA mRNA downstream 21425 1341073 ~ 1344035 (-) True CI01000158_01341073_01343685
CI01000158_01339302_01340074.mRNA mRNA downstream 25386 1339236 ~ 1340074 (-) True CI01000158_01339302_01340074
CI01000158_01262724_01264911.mRNA mRNA downstream 100549 1262005 ~ 1264911 (-) False CI01000158_01262724_01264911
CI01000158_01247736_01251443.mRNA mRNA downstream 114002 1247559 ~ 1251458 (-) True CI01000158_01247736_01251443
CI01000158_01192157_01194797.mRNA mRNA downstream 170663 1192144 ~ 1194797 (-) True CI01000158_01192157_01194797
CI01000158_01410134_01419385.mRNA mRNA upstream 23262 1409995 ~ 1419665 (-) True CI01000158_01410134_01419385
CI01000158_01453526_01476090.mRNA mRNA upstream 66549 1453282 ~ 1476090 (-) False CI01000158_01453526_01476090
CI01000158_01487198_01495799.mRNA mRNA upstream 100056 1486789 ~ 1495906 (-) False CI01000158_01487198_01495799
CI01000158_01534561_01537689.mRNA mRNA upstream 147739 1534472 ~ 1538085 (-) True CI01000158_01534561_01537689
CI01000158_01561252_01564385.mRNA mRNA upstream 174519 1561252 ~ 1564563 (-) True CI01000158_01561252_01564385
TU414877 other downstream 642948 722381 ~ 722512 (-) True G363734
TU414879 other downstream 1050071 314404 ~ 315389 (-) True G363736
TU415299 other upstream 69401 1479208 ~ 1501547 (-) True G364103
TU415405 other upstream 301233 1687966 ~ 1688828 (-) True G364203

Expression Profile