Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU415139 |
| length | 1063 |
| lncRNA type | inter_gene |
| GC content | 0.35 |
| exon number | 1 |
| gene id | G363963 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000158 |
| NCBI id | null |
| chromosome length | 1938735 |
| location | 995019 ~ 996081 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU415193 | lncRNA | downstream | 15451 | 979337 ~ 979568 (-) | True | G364015 |
| TU415189 | lncRNA | downstream | 26370 | 968428 ~ 968649 (-) | True | G364011 |
| TU415188 | lncRNA | downstream | 27962 | 966820 ~ 967057 (-) | True | G364010 |
| TU415182 | lncRNA | downstream | 43999 | 950802 ~ 951020 (-) | True | G364004 |
| TU415160 | lncRNA | downstream | 64961 | 926961 ~ 930058 (-) | True | G363984 |
| TU415209 | lncRNA | upstream | 46921 | 1043002 ~ 1043256 (-) | True | G364030 |
| TU415148 | lncRNA | upstream | 208771 | 1204852 ~ 1214069 (-) | True | G363972 |
| TU415265 | lncRNA | upstream | 257966 | 1254047 ~ 1335935 (-) | True | G364076 |
| TU415133 | lncRNA | upstream | 265049 | 1261130 ~ 1266583 (-) | True | G363957 |
| TU415317 | lncRNA | upstream | 362075 | 1358156 ~ 1437480 (-) | True | G364116 |
| CI01000158_00964222_00966170.mRNA | mRNA | downstream | 28849 | 962628 ~ 966170 (-) | True | CI01000158_00964222_00966170 |
| CI01000158_00944536_00948113.mRNA | mRNA | downstream | 46906 | 943955 ~ 948113 (-) | True | CI01000158_00944536_00948113 |
| CI01000158_00873090_00877118.mRNA | mRNA | downstream | 117144 | 873032 ~ 877875 (-) | True | CI01000158_00873090_00877118 |
| CI01000158_00781706_00786082.mRNA | mRNA | downstream | 208739 | 781579 ~ 786280 (-) | True | CI01000158_00781706_00786082 |
| CI01000158_00757981_00771461.mRNA | mRNA | downstream | 222582 | 757485 ~ 772437 (-) | True | CI01000158_00757981_00771461 |
| CI01000158_00996425_01012543.mRNA | mRNA | upstream | 241 | 996322 ~ 1013249 (-) | True | CI01000158_00996425_01012543 |
| CI01000158_01015366_01021562.mRNA | mRNA | upstream | 19214 | 1015295 ~ 1021562 (-) | True | CI01000158_01015366_01021562 |
| CI01000158_01023714_01028130.mRNA | mRNA | upstream | 27265 | 1023346 ~ 1028154 (-) | True | CI01000158_01023714_01028130 |
| CI01000158_01103049_01104386.mRNA | mRNA | upstream | 106715 | 1102796 ~ 1104474 (-) | True | CI01000158_01103049_01104386 |
| CI01000158_01106641_01108816.mRNA | mRNA | upstream | 110481 | 1106562 ~ 1108816 (-) | True | CI01000158_01106641_01108816 |
| TU414877 | other | downstream | 272507 | 722381 ~ 722512 (-) | True | G363734 |
| TU414879 | other | downstream | 679630 | 314404 ~ 315389 (-) | True | G363736 |
| TU415299 | other | upstream | 460053 | 1479208 ~ 1501547 (-) | True | G364103 |
| TU415405 | other | upstream | 691885 | 1687966 ~ 1688828 (-) | True | G364203 |
