RNA id: TU415309



Basic Information


Item Value
RNA id TU415309
length 1719
lncRNA type antisense_over
GC content 0.41
exon number 1
gene id G364109
representative False

Chromosome Information


Item Value
chromosome id CI01000158
NCBI id null
chromosome length 1938735
location 1669390 ~ 1671108 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TCTACAGTTCTTTTATTAAAGTGTACACTTCAGACACTCCAAGGATATGAAGCATGCATCATTCATGTATCAGCAAAATTATGTAACAGGACACATTATTAAAAAAAAAAAAAACTTTTTTTATTTATAACTTTGAATATGCACAGATTTACTGAAAAACGGTTTCATACAATTATGTACAGTCAGGAGGTTTAGATGATCAAAACAGTCTTGTGTAAAAGCTGCAGCCTGGAGTCTATAAGCAGAACAATAGGCATTATTCAGTGTCTTATTGAAGCACAGACCATGTCTAATTAGTGCTGTATCGTAAAGCAGAACAAAAACAAGAAATATAGACCCTCCCTTTTACCCACATCCCCCCTACCCCCCACCACAGTGATTAAAATCAAATGAAAACAAGTGGGCCGCTGACCCTAATATCATTAACAAAGACAAAAATACCCGTGTATATCTAATTCAATATTACCATGACACAGTGTTAACAGAAAATACATTCTGTCATTTCATTATCTGAATGTTTGCATCTAGTTTGATACAAAACCTGTTGCATGTAAATGGGACGTTGACAGTGTCCTGCAGTGTTACATGCTTTATTTAATCTAAAACGATTTTAAACAATTTTTTTTTTGTATCATGACATGCAACTTTAATGAATATGGAATATTTGTACTTAAACATTTCTCACATTGCATGGTCAGAAATGGAGACTAGTTAGAGCACCTACAAATACATTTTCATATAAATTTTAACCTTAAATCTGGATTTCGAATAAAAACTATGGTTATTTGTGAACTAACCAAATACTAAACAGTTTTACAGCCTTGAAAGTCCATATGCGCAGAGCCATAGTCCATGGTTAAAGGTTGAGGTGATCACACATAGTTTCGTTTATCATAGTCCCCATTGATTGATGTGCTTTTCGTAGGTGGAGGTACATATTTGAGGGGATACGAGGATTTTTCATCTTGTGGACGGGAGAAACACAGAAGTGCTCCTCCGACCAGAAGCATGGCAGATGCTGCCCATCCGATGTAGAGCGCAGCTCCAATCTCTCTCTTCTTTGAATAAGGAACTTGAGGGTCGTAGAAGTCTGAGATGATGTTATTGGCCATCCAGCACAGAGGCACCAACACAAACAAGCCTGCCATGATGTATATCACCCCTCCGACGTTGACTACTTTGGCTTTGATGGACTCTTTACTGATGCAGTTGGTGCACTGAGCGCCGGCGATGGTTATCATCAGAGCCTGGACACCCAAGACAGCGGAGATGACCGTCAGAGCCCGAGCAGTCTGGAGGTCAGTGGTCAGAGCCAGGACGGAGTCATGCATTTTACACTGCATCTGACCCGTGCTTTGAACCACGCAGGACATCCACAGCCCGTCCCAGATGCTTTGCGCCACCACAATGTTGCCCTCGATGAAGGCGGTCACTTTCCACATGGGCAAACCGCAAGCCACCATGACCAAAAGGGTCCCGATGACGCTCAAGCCAAGTCCAATAATCTCCAGACATGCAGAAATCATCTTTGCAAAGTTGTTTTGATGCTCCTTCTCTTAGTTTAGAAAGTCTAGTGAGGTCCCTGTTAAATTTCAAGCAGGTGTTTTGAGCAGAAGTGTCTCTACATCGCTTGGCAGTGTGGCAGGATGAGATGCAGTGGGAGTTTTCTGCTCTTGTATGCAGGGAGGATGCTGTTATAGTGCACTCACAACAAAGAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU415402 lncRNA downstream 3250 1665930 ~ 1666140 (-) True G364200
TU415300 lncRNA downstream 215581 1452257 ~ 1452976 (-) False G364103
TU415313 lncRNA downstream 221585 1426023 ~ 1447805 (-) True G364112
TU415317 lncRNA downstream 231910 1358156 ~ 1437480 (-) True G364116
TU415316 lncRNA downstream 235224 1358463 ~ 1434166 (-) True G364115
TU415433 lncRNA upstream 108102 1779210 ~ 1789155 (-) False G364229
TU415434 lncRNA upstream 111139 1782247 ~ 1789155 (-) False G364229
TU415435 lncRNA upstream 114880 1785988 ~ 1789155 (-) True G364229
TU415481 lncRNA upstream 183503 1854611 ~ 1869953 (-) False G364268
TU415480 lncRNA upstream 196934 1868042 ~ 1869953 (-) True G364268
CI01000158_01641190_01654617.mRNA mRNA downstream 14773 1641084 ~ 1654617 (-) True CI01000158_01641190_01654617
CI01000158_01602975_01638158.mRNA mRNA downstream 31232 1602922 ~ 1638158 (-) True CI01000158_01602975_01638158
CI01000158_01595127_01599555.mRNA mRNA downstream 69080 1594960 ~ 1600310 (-) True CI01000158_01595127_01599555
CI01000158_01561252_01564385.mRNA mRNA downstream 104827 1561252 ~ 1564563 (-) True CI01000158_01561252_01564385
CI01000158_01534561_01537689.mRNA mRNA downstream 131305 1534472 ~ 1538085 (-) True CI01000158_01534561_01537689
CI01000158_01674288_01681153.mRNA mRNA upstream 2570 1673678 ~ 1681153 (-) True CI01000158_01674288_01681153
CI01000158_01689842_01690063.mRNA mRNA upstream 18435 1689543 ~ 1690063 (-) True CI01000158_01689842_01690063
CI01000158_01808271_01810226.mRNA mRNA upstream 136852 1807960 ~ 1810531 (-) True CI01000158_01808271_01810226
CI01000158_01921098_01929676.mRNA mRNA upstream 249484 1920592 ~ 1929676 (-) True CI01000158_01921098_01929676
TU415299 other downstream 167843 1479208 ~ 1501547 (-) True G364103
TU414877 other downstream 946878 722381 ~ 722512 (-) True G363734
TU414879 other downstream 1354001 314404 ~ 315389 (-) True G363736
TU415405 other upstream 16858 1687966 ~ 1688828 (-) True G364203

Expression Profile