RNA id: TU415405


Basic Information

Item Value
RNA id TU415405
length 638
RNA type TUCP
GC content 0.48
exon number 3
gene id G364203
representative True

Chromosome Information

Item Value
chromosome id CI01000158
NCBI id null
chromosome length 1938735
location 1687966 ~ 1688828 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACCGTTTATTTATTTTTTTATTTTTTCAAAGTGTCCAAAATCCCTCACTGTTGCTTTGAGGTTTCAGTTAATTCACTCTTTTTTTCTTCTTCCTCTTCTTTTTTTGGACACAGATCTATAACAGGAGGTCAGTGAGGTTTAAGAAAGACAGTTTATTTAGCATCGGGCAGAAAGGGGCATGAGAGTTTTTGCAAGGAGAAATCCGTTACTGCTGGATACGGCGGATGGACTGGATCTGAGGGGTCTGGCAATGGGAACCAAACTCCTTGAAGTGTTTGTACTCCCCACAGTGGCGGTCACACTCCATGATATACTGGTATCCACGATAACCAGGGAACTGGTAGCACACAAACGCTCCGGACTGAACACGGAAAGAACCCACTTCGTTGTTGCACCATCCCATAGCCTGAAGAGAAGGGTAATCGTCACTGAGCTCTCCCTTGCGGCCCAGGAAGTTCTCCCTTTCATAGATGGTCATTCTGCACTCCCTGTGGTTAGCACAGGAAATGGGTCTAAAGGAGGTCATTCTCTCGATGTGGTAAGCATTGCTTCCCCCAAAGGCATCGCACTGAGGGTACTCTCCGCGCTCCAGCACAAACTGGTGACCCTGGTAAGAGGCGTGCTCGTAGCCCACCCAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU415309 lncRNA downstream 16858 1669390 ~ 1671108 (-) False G364109
TU415310 lncRNA downstream 16858 1669432 ~ 1671108 (-) False G364109
TU415308 lncRNA downstream 16858 1669452 ~ 1671108 (-) True G364109
TU415402 lncRNA downstream 21826 1665930 ~ 1666140 (-) True G364200
TU415300 lncRNA downstream 234157 1452257 ~ 1452976 (-) False G364103
TU415433 lncRNA upstream 90382 1779210 ~ 1789155 (-) False G364229
TU415434 lncRNA upstream 93419 1782247 ~ 1789155 (-) False G364229
TU415435 lncRNA upstream 97160 1785988 ~ 1789155 (-) True G364229
TU415481 lncRNA upstream 165783 1854611 ~ 1869953 (-) False G364268
TU415480 lncRNA upstream 179214 1868042 ~ 1869953 (-) True G364268
CI01000158_01674288_01681153.mRNA mRNA downstream 6813 1673678 ~ 1681153 (-) True CI01000158_01674288_01681153
CI01000158_01641190_01654617.mRNA mRNA downstream 33349 1641084 ~ 1654617 (-) True CI01000158_01641190_01654617
CI01000158_01602975_01638158.mRNA mRNA downstream 49808 1602922 ~ 1638158 (-) True CI01000158_01602975_01638158
CI01000158_01595127_01599555.mRNA mRNA downstream 87656 1594960 ~ 1600310 (-) True CI01000158_01595127_01599555
CI01000158_01561252_01564385.mRNA mRNA downstream 123403 1561252 ~ 1564563 (-) True CI01000158_01561252_01564385
CI01000158_01689842_01690063.mRNA mRNA upstream 715 1689543 ~ 1690063 (-) True CI01000158_01689842_01690063
CI01000158_01808271_01810226.mRNA mRNA upstream 119132 1807960 ~ 1810531 (-) True CI01000158_01808271_01810226
CI01000158_01921098_01929676.mRNA mRNA upstream 231764 1920592 ~ 1929676 (-) True CI01000158_01921098_01929676
TU415299 other downstream 186419 1479208 ~ 1501547 (-) True G364103
TU414877 other downstream 965454 722381 ~ 722512 (-) True G363734
TU414879 other downstream 1372577 314404 ~ 315389 (-) True G363736

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00004586 False 1807 mRNA 0.41 5 NC_007121.7 44042033 ~ 44051808 (+)