RNA id: TU415480


Basic Information

Item Value
RNA id TU415480
length 1610
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G364268
representative True

Chromosome Information

Item Value
chromosome id CI01000158
NCBI id null
chromosome length 1938735
location 1854611 ~ 1869953 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTGCAGTAGGACATCACTTGCAGGGGGAAAAAATACTACTTTAAAACCTGCACTACAAACTGCTCTAAGTACAAAGACTTAAAAATGACAGCAGGCAGGATGGGCCACAGACAGACAGACATAGGACGGCGCCACCACGACGCCTTTAAATCGGAGCAAAGGGCTTCACGTACTTCAGGGTTTGACTGTCCCGTAAATCACGGTATTGAGGCGAAAGAACACTGTGTAAACCCATCACTTGTTTTTTTCCACTCACTTGTCACATCACACACACTCACACACACACACGCACATTTGTGAATGGCAGAATGAGAGCCTCCGGCTGTGAGTGCATCCGTGTTGAGTCACATGTTGTAAAACCACAGGCCGAACGATCTCTGCACTGATACTTCCTGTTTCACAGACCCTTTCCCTTCACGCCCCTCTCTCTCTCTCTCTCTCGGCTGATGAGTGCCCTTTCCTCTGGAGGTTGGGGAGGTGGGGAGAGTGGAATTGTCAGGATCTATTTACATCACTTCCTCTTAGAGCTGGAGCAATACGGGACGTGTCTGTGGGCCTCTTCATATGGACACCTCATATTCTCTCGTGTCCTGCAGAAAATAAACACAAGAGATGCTGTGAGGATTACATTTATGTTAGCATTACGGAGCATCTTGCAGTGTTTGAGCATGCAAAAACCTCATTGCAACCACAGGTGGTGTTGTTCTACTAGGTGATTTCCTGGACCTTGTTATGTGGTTCAGGATGGTTGGTTAGGCTGTTGCTAGGGTGTTTTGGTTTCCAGAGCTTTTCTATGTACAGTAGCTGCTATGGTGTTCTGGAAGGTTGCCAGGGCAGTGCTATGTGGCTTTGGATGGTTGCTAGGGAGTTGCTAGGTGGTTGCTAGGGTTTTCTGGGAGTTTGTAAGTGGTTTCTCAGACGTTTTGGATGATTGCCAAGACTTATGCAGTTGCTAGGATGCTCTGGGAAGTTGCCAGGACAGTGCTATGTGGCTTTGGATGGTTGCTAGGGAGTTGCTAGGTGGCTGCTAGGGTTTTCTGGGAGTTGCTAAGTGGTTTCTCAGATGTTTTGGATGATTGCCAAGACTTATGCGGTTGCTAGGATGCTCTGGGAAGTTGCCAGGACAGTGCTATGTGGCTTTGGATAGTTGCTAGGGAGTTGCTAGGTGGTTGCTAGGGTTTTCTGGGAGTTTGTAAGTGGTTTCTCAGACGTTTTGGATGGTTGCCAAGACTTATACAGTTGCTAGGGTGGTCTGGGAAGTTGCCAGGGCAGTGCTATGTGGTTCCTAAGGGGTTCTAGATGGTTGCTAGGTGGTTGCTGGAGTTTTCTGGGAGTTTGTAAGTGGTTTCTCAGATGTTTTGGATGATTGCCAAGACTTACATGGTTGCTAGGGTGCTCTGGGAAGTTGCCAGGGCAGTGCTATGTGGTTCCTAAGGGGTTCTAGATGGTTGCTAGGTGGTTGCTAGGGTTTTCTGGGAGTTGCTAAGTGGTTTCTCAGATGTTTTGGATGATTGCCAAGACTTATCCAGTTGCTAGGATGCTCTGGGAAGTTGCCAGGACAGTGCTATGTGGTACCTAAGGGGTTCTAGGTGGTTGCTAGGAAGTTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU415433 lncRNA downstream 78887 1779210 ~ 1789155 (-) False G364229
TU415434 lncRNA downstream 78887 1782247 ~ 1789155 (-) False G364229
TU415435 lncRNA downstream 78887 1785988 ~ 1789155 (-) True G364229
TU415310 lncRNA downstream 196934 1669432 ~ 1671108 (-) False G364109
TU415512 lncRNA upstream 28995 1898948 ~ 1899444 (-) True G364286
TU415484 lncRNA upstream 32642 1902595 ~ 1907980 (-) True G364270
TU415488 lncRNA upstream 39009 1908962 ~ 1909163 (-) True G364272
TU415506 lncRNA upstream 47830 1917783 ~ 1919775 (-) True G364282
CI01000158_01808271_01810226.mRNA mRNA downstream 57511 1807960 ~ 1810531 (-) True CI01000158_01808271_01810226
CI01000158_01689842_01690063.mRNA mRNA downstream 177979 1689543 ~ 1690063 (-) True CI01000158_01689842_01690063
CI01000158_01674288_01681153.mRNA mRNA downstream 186889 1673678 ~ 1681153 (-) True CI01000158_01674288_01681153
CI01000158_01641190_01654617.mRNA mRNA downstream 213425 1641084 ~ 1654617 (-) True CI01000158_01641190_01654617
CI01000158_01602975_01638158.mRNA mRNA downstream 229884 1602922 ~ 1638158 (-) True CI01000158_01602975_01638158
CI01000158_01921098_01929676.mRNA mRNA upstream 50639 1920592 ~ 1929676 (-) True CI01000158_01921098_01929676
TU415405 other downstream 179214 1687966 ~ 1688828 (-) True G364203
TU415299 other downstream 366495 1479208 ~ 1501547 (-) True G364103
TU414877 other downstream 1145530 722381 ~ 722512 (-) True G363734
TU414879 other downstream 1552653 314404 ~ 315389 (-) True G363736

Expression Profile