RNA id: TU415506


Basic Information

Item Value
RNA id TU415506
length 1993
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G364282
representative True

Chromosome Information

Item Value
chromosome id CI01000158
NCBI id null
chromosome length 1938735
location 1917783 ~ 1919775 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAGCAATGCATTTTTATAAGAAAAATATCTATATTTAAAACTTTATAAATTCAAATAACTAGCTTCATGACCGGTGTTTTGTTTTGCTCTTTCCTCTGAGCTTTCGTGTTTATCATTACGTCATGCGACGGGTCAGAGGTCACTCTTACGCCGCAAATCGATGTGTATGGCCATCTGCTGGAAGCTAGTTATTATAGTTAATAACGTTTTAAATATGGATATTTTTCTTACAAAATCATATTGCTTCACTTTAGAATGCCTTTATTAACCCCTTGGAGCCGTATGGATTATTATTATGATGGATGGATGCATTTTTTTGGCTTCAAAATCTTCTAAGACTCTCATTTTTGATTGTATATTTCAAATATGTGTGTGCTTTCTGTAAAATAACACCTGGCTTTTGTTTTGTGGTGACTGATTGTAAGATCTTGATAAAAAGAAAGTTTTAAAAGAGACATTCAGGCATAGATATTCATAAAGATTGTGCATTAAAATTATAATGGCATTTTGATATACAGTAGTATATGCTGAGCTATACAGCTTGTACAAAAGTTTCTGCGACAACAACAGATCTTTTTCAGCGTTATCAAAATCAATATTCCAGTAAGTGCTAGTTCTACACGTTGCTTTTAATCTGAGGTCCATTTTCTCACACAGTAGTTGTTGTATATCTGTGTGTAATGTCGTGATGCTGTTTTGACGTGGCTTGTGCTCGCTTTACATGCTTTTTTTAGCACAAAATTGTAGAGGCTCTTGCTTTGTTGGGCAGGTGTTAGAGCTGCTTTGATGCCTGCAGAAGAACAAAAGAGCAGCGATGTTGCACCTTTTGAACTGCTCTGCAGCTGCATGCGCTTGCATCTAGCGTAATATCTCAGCCCTCTCAATTCTCAATGTTTAGAGTCACTCTGTATTTTTTAGACTGTTAAAAAACACAGTACTGGTTAGATTTGCTTTTACATAATGCAACGCATCACCAGCTGCATGTTCTCAGCTTTTTTTTATTATTTTTTACCTATTTGACTTGTGTTGTTTTGATTGTCCCACCAGGGGCCAAACCTTTTACCAAGAAAAAAAAATATTTTAGGGACCATAATATCAAGAACATCATCATAAGAGGACATATATGAGATCGAAGTGGTCCATGTCTATTAGCTTTGAGGCCCTTATGGTAGAATATGCAGTAAGTTGATTTAACTTTTAATGCATTTCAAATTTACAGTGTTTCTCTAGGTGGTGGACCAAATATTTTGACTCATGTTGTCCACAGGGGCATATTCAAATTTTTTGTCCAATCAAATGCTCTCTAGAATGAGAATGTCCCTTCGATCTAATATAACGAGCCACCGAATGCTGCAATTGCAGCCGAAAAATCATGGTTTTACAAAAGGATGAGTCCTTAGATACTTTATGTCTCGTTCCAACTTCCTGTTACAATAGGAAGTACATCATAAAGGGTCAGAAAATTAGTTCAGAAAAGCTGCTGATGCCAGAAACATCAGCGACCACAAAAAATCATAATCTTTTAATGTGATTGACTGTTTAAAGTAATCTCTGCTCCACTAGAGGAACCATAAAAAGTAATAACCTGCAAAAATAAAAAAGGTTGACCAGACTTTCCCACCAGCCCTTCAGGTAGCCTGTACTCAACTCACACCACCAGAAGTTGCTGTTAAAGCACACAAACTGAGTATAATGTTATTTAAAGCACCACAGAGCTGCATAGATTACACTCAAATTATTCTGATTTATGTATGTACATATGATGTATTTAATTTGTTTATCTGTTAAAAGACTTGTTCATAAAATAAAGCTACTGCTCATCTGTAAGCGTGTAAGAGCTTTAAATTTATAGCCTTACACTGCTAATATTAGACTGCAATTGAGAAAACATTACTGTGTACTTGTCTTGTCATTGCTTTATGATGTTCTGAAGGAAATGTACATCTCAAATGGCTCTTGTTTGCATCTCTGCTTTGCTTAATAAAATCAGAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU415488 lncRNA downstream 8620 1908962 ~ 1909163 (-) True G364272
TU415484 lncRNA downstream 9803 1902595 ~ 1907980 (-) True G364270
TU415512 lncRNA downstream 18339 1898948 ~ 1899444 (-) True G364286
TU415481 lncRNA downstream 47830 1854611 ~ 1869953 (-) False G364268
TU415480 lncRNA downstream 47830 1868042 ~ 1869953 (-) True G364268
CI01000158_01808271_01810226.mRNA mRNA downstream 107252 1807960 ~ 1810531 (-) True CI01000158_01808271_01810226
CI01000158_01689842_01690063.mRNA mRNA downstream 227720 1689543 ~ 1690063 (-) True CI01000158_01689842_01690063
CI01000158_01674288_01681153.mRNA mRNA downstream 236630 1673678 ~ 1681153 (-) True CI01000158_01674288_01681153
CI01000158_01641190_01654617.mRNA mRNA downstream 263166 1641084 ~ 1654617 (-) True CI01000158_01641190_01654617
CI01000158_01602975_01638158.mRNA mRNA downstream 279625 1602922 ~ 1638158 (-) True CI01000158_01602975_01638158
CI01000158_01921098_01929676.mRNA mRNA upstream 817 1920592 ~ 1929676 (-) True CI01000158_01921098_01929676
TU415405 other downstream 228955 1687966 ~ 1688828 (-) True G364203
TU415299 other downstream 416236 1479208 ~ 1501547 (-) True G364103
TU414877 other downstream 1195271 722381 ~ 722512 (-) True G363734
TU414879 other downstream 1602394 314404 ~ 315389 (-) True G363736

Expression Profile