RNA id: TCONS_00018377


Basic Information

Item Value
RNA id TCONS_00018377
length 1697
RNA type mRNA
GC content 0.32
exon number 2
gene id XLOC_009347
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 31331356 ~ 31366742 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAAAATAACTACATGATATTCCAATATTATGCAAAGTTACAGAAAGcttgCTCGAAACAACAAAAGCAAATCTGCAATGAGTTCTGTAAATGCAAGTTTTTCCCAGAATATCTCCATTGTTCATCCTGAGAACTTTTTCATCATTGGACTTACGGGTATACAGCACAGTGgttattactatatatttttatttttcacatattttataTCTGTAATTGGGAACTCTGTAGTTCTTCTCATTATAGCTCTTGAGAGGAATCTGCACAGTGCAAAGTACATTGGTGTGTTTAACTTGGCCTTGGCTGATATTGGTGAAACTAGTGCTCTGATTCCTAACATGATGAAGAATTTTCTGTTTGACTCTCAGTACATCTCCTATAATGGTTGCATGGCAAATATGTTTTTTGTGTTCCTCTTTAGTTCCATGCAAAGTTTCACTCTTGTTGTTATGGCATATGATCGTTTAATTGCAATTTGTTTGCCGCTAAGATATCATGCTATTGTCAATAATACCAGTATGATTTTAATGACTTTAGCAATTTGGGCATTTAATACTTTTGTGGTGGCCTTGATGGTGTCTTTGATCAACCGACTTTCATTCTGTGAATCCAATATGATACAGAGTTATTTTTGTGATCACGGGCCAGTTTTTAGGTTGGCTTGTAATGACAATAGCATGAATAAGATTATGGCATATGTCATTTCAGTTCTGTACATTTTAGCACCAATGGTCGTTATCGTCTTTTCATATCTGGCCATTTTTCTTGCTTTAATCAAAATCACAACTTGGGAAGGACGATTAAAAGCACTGAAGACCTGTGTGTCTCACCTGTTGTTAGTGGGAATATTTTTCCTCCCTGTATGCTGCACATACATTGCACAAGTCTTGCTTTATCTCACACCCAATGCCAGAATCATCAGCACATCTTTTTCGTATGCTGTTCCTCCAGTGCTAAATcctattatttatgttttaaacacagcagaaatcaaagacattattaaaaaaatgattaaaaacaaatctgCACCGATCAGAGAGAACATTTCAAAATGATTCTGTAACATTTTTTGTTATGTGATTGGGTCTGAATGACAGTAGAAAAAAACATCTCTGGgaagaagtttttttttgtgctatttttTCCTATATAACCATCTTAAGAATTtacttttaaagacaaaaaatgcAACCCAAACAATTcagattcttaaaaaaataaaatacatgaaaCTTTTATGTTACGGTTTTTAATCCAGCTGATTTCTagtgtttctgtttgtttgataTTGTACTGCAAAAGAAGGAAAATATTAATGTGACTTAAGTGAGAAATCGGTGCCACAGTATGTTGACATTTCATATTGCCTTAATCCTATCAATTACTGTCATTTACaagtatttttgtttcttttctgctAATTCAGTGAGAAGtgtgatcattttaaatattacttctTGATGTTTGTGTTTTCATTCCAAGTGTCAATTTTAAAATGACCCTCTTTTTTTGtacagtaatacatttttaaatatgaaacCATGATACACACAAATGTAACTTTGCATTTtccgtttattttttctgtttttaaagctTATTAAAATGACAGCTTTGATGCCTAAAGCTTTGATTCAAACATATGAACatctaaaatttattttaatttacatgaaTAAAAGTCGACTTGCATT

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010308-19 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in olfactory rosette.

Ensembl:

ensembl_id ENSDART00000127485

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018361 lncRNA downstream 188335 31166695 ~ 31167511 (-) True XLOC_009338
TCONS_00018351 lncRNA downstream 343134 31005981 ~ 31012712 (-) True XLOC_009333
TCONS_00019204 lncRNA downstream 431757 30923150 ~ 30924089 (-) True XLOC_009331
TCONS_00019203 lncRNA downstream 440585 30911402 ~ 30915261 (-) True XLOC_009330
TCONS_00018343 lncRNA downstream 507264 30844108 ~ 30848582 (-) False XLOC_009328
TCONS_00018395 lncRNA upstream 156572 31514206 ~ 31516514 (-) True XLOC_009359
TCONS_00018398 lncRNA upstream 227764 31585398 ~ 31587989 (-) True XLOC_009361
TCONS_00019205 lncRNA upstream 1055680 32413314 ~ 32433673 (-) True XLOC_009364
TCONS_00018405 lncRNA upstream 1275656 32633290 ~ 32634932 (-) False XLOC_009366
TCONS_00019206 lncRNA upstream 1275656 32633290 ~ 32635777 (-) False XLOC_009366
TCONS_00018376 mRNA downstream 3717 31350122 ~ 31352129 (-) False XLOC_009347
TCONS_00018374 mRNA downstream 31914 31320017 ~ 31323932 (-) True XLOC_009346
TCONS_00018373 mRNA downstream 36570 31317358 ~ 31319276 (-) True XLOC_009345
TCONS_00018371 mRNA downstream 41914 31311716 ~ 31313932 (-) True XLOC_009343
TCONS_00018369 mRNA downstream 67876 31282220 ~ 31287970 (-) True XLOC_009341
TCONS_00018379 mRNA upstream 7075 31364709 ~ 31366742 (-) True XLOC_009347
TCONS_00018380 mRNA upstream 13556 31371190 ~ 31372486 (-) True XLOC_009349
TCONS_00018381 mRNA upstream 24381 31382015 ~ 31383588 (-) True XLOC_009350
TCONS_00018382 mRNA upstream 31769 31389403 ~ 31390985 (-) False XLOC_009351
TCONS_00018383 mRNA upstream 32103 31389737 ~ 31390760 (-) True XLOC_009351
TCONS_00018372 other downstream 40298 31315209 ~ 31315548 (-) True XLOC_009344
TCONS_00018370 other downstream 56168 31299563 ~ 31299678 (-) True XLOC_009342
TCONS_00018367 other downstream 118451 31206438 ~ 31237395 (-) True XLOC_009339
TCONS_00018355 other downstream 288440 31062557 ~ 31067406 (-) True XLOC_009336
TCONS_00018344 other downstream 506683 30844389 ~ 30849163 (-) True XLOC_009328
TCONS_00018378 other upstream 4153 31361787 ~ 31362141 (-) True XLOC_009348
TCONS_00018396 other upstream 190100 31547734 ~ 31547852 (-) True XLOC_009360
TCONS_00018399 other upstream 705658 32063292 ~ 32063409 (-) True XLOC_009362
TCONS_00018418 other upstream 2305421 33663055 ~ 33663172 (-) True XLOC_009370
TCONS_00018421 other upstream 2349046 33706680 ~ 33734106 (-) True XLOC_009372

Expression Profile

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