RNA id: TCONS_00018378


Basic Information

Item Value
RNA id TCONS_00018378
length 355
RNA type unprocessed_pseudogene
GC content 0.33
exon number 1
gene id XLOC_009348
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 31361787 ~ 31362141 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttgctttttttatacattatgCTGCCAATGGTCATTGTTGGCCTTTCATATGTGTATATTTTCTTGCTTTGACCAAAATTACAACTTGGGAAGGACATTTAAAAGCATTGAAGACCTGTGTGTCTCACCTGTTGTTAGTAGGAATATTTTTCCTTCCTGTATACTGCACATACACAGCACAAATTATGCTTACTCTTACTCCTAATGCCAGAATAATCAGCACATCTCTGTCATATACTATTCCAGCAATGCTAAATCCCACTATATATGTTTTAAACACAGCTGAAATCAAAGATATAATTAGAAAATTGTTTAAAAAGAGACTGAGGCCAGTTAgtaagaacattttaaaat

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000174149

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018361 lncRNA downstream 194276 31166695 ~ 31167511 (-) True XLOC_009338
TCONS_00018351 lncRNA downstream 349075 31005981 ~ 31012712 (-) True XLOC_009333
TCONS_00019204 lncRNA downstream 437698 30923150 ~ 30924089 (-) True XLOC_009331
TCONS_00019203 lncRNA downstream 446526 30911402 ~ 30915261 (-) True XLOC_009330
TCONS_00018343 lncRNA downstream 513205 30844108 ~ 30848582 (-) False XLOC_009328
TCONS_00018395 lncRNA upstream 152065 31514206 ~ 31516514 (-) True XLOC_009359
TCONS_00018398 lncRNA upstream 223257 31585398 ~ 31587989 (-) True XLOC_009361
TCONS_00019205 lncRNA upstream 1051173 32413314 ~ 32433673 (-) True XLOC_009364
TCONS_00018405 lncRNA upstream 1271149 32633290 ~ 32634932 (-) False XLOC_009366
TCONS_00019206 lncRNA upstream 1271149 32633290 ~ 32635777 (-) False XLOC_009366
TCONS_00018377 mRNA downstream 4153 31355846 ~ 31357634 (-) False XLOC_009347
TCONS_00018376 mRNA downstream 9658 31350122 ~ 31352129 (-) False XLOC_009347
TCONS_00018374 mRNA downstream 37855 31320017 ~ 31323932 (-) True XLOC_009346
TCONS_00018373 mRNA downstream 42511 31317358 ~ 31319276 (-) True XLOC_009345
TCONS_00018371 mRNA downstream 47855 31311716 ~ 31313932 (-) True XLOC_009343
TCONS_00018379 mRNA upstream 2568 31364709 ~ 31366742 (-) True XLOC_009347
TCONS_00018380 mRNA upstream 9049 31371190 ~ 31372486 (-) True XLOC_009349
TCONS_00018381 mRNA upstream 19874 31382015 ~ 31383588 (-) True XLOC_009350
TCONS_00018382 mRNA upstream 27262 31389403 ~ 31390985 (-) False XLOC_009351
TCONS_00018383 mRNA upstream 27596 31389737 ~ 31390760 (-) True XLOC_009351
TCONS_00018372 other downstream 46239 31315209 ~ 31315548 (-) True XLOC_009344
TCONS_00018370 other downstream 62109 31299563 ~ 31299678 (-) True XLOC_009342
TCONS_00018367 other downstream 124392 31206438 ~ 31237395 (-) True XLOC_009339
TCONS_00018355 other downstream 294381 31062557 ~ 31067406 (-) True XLOC_009336
TCONS_00018344 other downstream 512624 30844389 ~ 30849163 (-) True XLOC_009328
TCONS_00018396 other upstream 185593 31547734 ~ 31547852 (-) True XLOC_009360
TCONS_00018399 other upstream 701151 32063292 ~ 32063409 (-) True XLOC_009362
TCONS_00018418 other upstream 2300914 33663055 ~ 33663172 (-) True XLOC_009370
TCONS_00018421 other upstream 2344539 33706680 ~ 33734106 (-) True XLOC_009372
TCONS_00018452 other upstream 2917280 34279421 ~ 34279535 (-) True XLOC_009383